id,node_id,number,title,user,state,locked,assignee,milestone,comments,created_at,updated_at,closed_at,author_association,pull_request,body,repo,type,active_lock_reason,performed_via_github_app,reactions,draft,state_reason
470637068,MDU6SXNzdWU0NzA2MzcwNjg=,1,Use XML Analyser to figure out the structure of the export XML,9599,closed,0,,,1,2019-07-20T05:19:02Z,2019-07-20T05:20:09Z,2019-07-20T05:20:09Z,MEMBER,,https://github.com/simonw/xml_analyser,197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/1/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
470637152,MDU6SXNzdWU0NzA2MzcxNTI=,2,Import workouts,9599,closed,0,,,1,2019-07-20T05:20:21Z,2019-07-20T06:21:41Z,2019-07-20T06:21:41Z,MEMBER,,From #1,197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/2/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
470637206,MDU6SXNzdWU0NzA2MzcyMDY=,3,Import ActivitySummary,9599,closed,0,,,0,2019-07-20T05:21:00Z,2019-07-20T05:58:07Z,2019-07-20T05:58:07Z,MEMBER,,"From #1
```python
'ActivitySummary': {'attr_counts': {'activeEnergyBurned': 980,
'activeEnergyBurnedGoal': 980,
'activeEnergyBurnedUnit': 980,
'appleExerciseTime': 980,
'appleExerciseTimeGoal': 980,
'appleStandHours': 980,
'appleStandHoursGoal': 980,
'dateComponents': 980},
'child_counts': {},
'count': 980,
'parent_counts': {'HealthData': 980}},
```",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/3/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
470640505,MDU6SXNzdWU0NzA2NDA1MDU=,4,Import Records,9599,closed,0,,,1,2019-07-20T06:11:20Z,2019-07-20T06:21:41Z,2019-07-20T06:21:41Z,MEMBER,,"From #1:
```python
'Record': {'attr_counts': {'creationDate': 2672233,
'device': 2665111,
'endDate': 2672233,
'sourceName': 2672233,
'sourceVersion': 2671779,
'startDate': 2672233,
'type': 2672233,
'unit': 2650012,
'value': 2672232},
'child_counts': {'HeartRateVariabilityMetadataList': 2318,
'MetadataEntry': 287974},
'count': 2672233,
'parent_counts': {'Correlation': 2, 'HealthData': 2672231}},
```",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/4/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
470691622,MDU6SXNzdWU0NzA2OTE2MjI=,5,Add progress bar,9599,closed,0,,,2,2019-07-20T16:29:07Z,2019-07-22T03:30:13Z,2019-07-22T02:49:22Z,MEMBER,,"Showing a progress bar would be nice, using Click.
The easiest way to do this would probably be be to hook it up to the length of the compressed content, and update it as this code pushes more XML bytes through the parser:
https://github.com/dogsheep/healthkit-to-sqlite/blob/d64299765064501f4efdd9a0b21dbdba9ec4287f/healthkit_to_sqlite/utils.py#L6-L10",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/5/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
470856782,MDU6SXNzdWU0NzA4NTY3ODI=,6,Break up records into different tables for each type,9599,closed,0,,,1,2019-07-22T01:54:59Z,2019-07-22T03:28:55Z,2019-07-22T03:28:50Z,MEMBER,,"I don't think there's much benefit to having all of the different record types stored in the same enormous table. Here's what I get when I use `_facet=type`:
I'm going to try splitting these up into separate tables - so `HKQuantityTypeIdentifierBodyMassIndex` becomes a table called `rBodyMassIndex` - and see if that's nicer to work with.",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/6/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
472097220,MDU6SXNzdWU0NzIwOTcyMjA=,7,Script uses a lot of RAM,9599,closed,0,,,3,2019-07-24T06:11:11Z,2019-07-24T06:35:52Z,2019-07-24T06:35:52Z,MEMBER,,"I'm using an XML pull parser which should avoid the need to slurp the whole XML file into memory, but it's not working - the script still uses over 1GB of RAM when it runs according to Activity Monitor.
I think this is because I'm still causing the full root element to be incrementally loaded into memory just in case I try and access it later.
http://effbot.org/elementtree/iterparse.htm says I should use `elem.clear()` as I go. It also says:
> The above pattern has one drawback; it does not clear the root element, so you will end up with a single element with lots of empty child elements. If your files are huge, rather than just large, this might be a problem. To work around this, you need to get your hands on the root element.
So I will try that recipe and see if it helps.",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/7/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
472429048,MDU6SXNzdWU0NzI0MjkwNDg=,9,Too many SQL variables,166463,closed,0,,,4,2019-07-24T18:24:17Z,2019-07-26T10:01:05Z,2019-07-26T10:01:05Z,NONE,,"Decided to try importing my data, and ran into this:
```
Traceback (most recent call last):
File ""/Users/tholo/Source/health/bin/healthkit-to-sqlite"", line 10, in
sys.exit(cli())
File ""/Users/tholo/Source/health/lib/python3.7/site-packages/click/core.py"", line 764, in __call__
return self.main(*args, **kwargs)
File ""/Users/tholo/Source/health/lib/python3.7/site-packages/click/core.py"", line 717, in main
rv = self.invoke(ctx)
File ""/Users/tholo/Source/health/lib/python3.7/site-packages/click/core.py"", line 956, in invoke
return ctx.invoke(self.callback, **ctx.params)
File ""/Users/tholo/Source/health/lib/python3.7/site-packages/click/core.py"", line 555, in invoke
return callback(*args, **kwargs)
File ""/Users/tholo/Source/health/lib/python3.7/site-packages/healthkit_to_sqlite/cli.py"", line 50, in cli
convert_xml_to_sqlite(fp, db, progress_callback=bar.update)
File ""/Users/tholo/Source/health/lib/python3.7/site-packages/healthkit_to_sqlite/utils.py"", line 41, in convert_xml_to_sqlite
write_records(records, db)
File ""/Users/tholo/Source/health/lib/python3.7/site-packages/healthkit_to_sqlite/utils.py"", line 80, in write_records
column_order=[""startDate"", ""endDate"", ""value"", ""unit""],
File ""/Users/tholo/Source/health/lib/python3.7/site-packages/sqlite_utils/db.py"", line 911, in insert_all
result = self.db.conn.execute(sql, values)
sqlite3.OperationalError: too many SQL variables
```
Added some debug output in sqlite_utils/db.py, which resulted in:
```
INSERT INTO [rBodyMassIndex] ([creationDate], [endDate], [metadata_HKWasUserEntered], [metadata_Health Mate App Version], [metadata_Modified Date], [metadata_Withings Link], [metadata_Withings User Identifier], [sourceName], [sourceVersion], [startDate], [unit], [value]) VALUES
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;
```
with the attached data:
```
['2019-06-27 22:55:10 -0700', '2011-06-22 21:05:53 -0700', '0', '4.4.2', '2011-06-23 04:05:53 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1308801953&type=1', '301293', 'Health Mate', '4040200', '2011-06-22 21:05:53 -0700', 'count', '30.0926', '2019-06-27 22:55:10 -0700', '2011-06-23 09:36:27 -0700', '0', '4.4.2', '2011-06-23 16:36:59 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1308846987&type=1', '301293', 'Health Mate', '4040200', '2011-06-23 09:36:27 -0700', 'count', '30.0926', '2019-06-27 22:55:10 -0700', '2011-06-23 23:54:07 -0700', '0', '4.4.2', '2011-06-24 06:55:19 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1308898447&type=1', '301293', 'Health Mate', '4040200', '2011-06-23 23:54:07 -0700', 'count', '30.679', '2019-06-27 22:55:10 -0700', '2011-06-24 09:13:40 -0700', '0', '4.4.2', '2011-06-24 16:14:35 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1308932020&type=1', '301293', 'Health Mate', '4040200', '2011-06-24 09:13:40 -0700', 'count', '30.3549', '2019-06-27 22:55:10 -0700', '2011-06-25 08:30:08 -0700', '0', '4.4.2', '2011-06-25 15:30:49 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1309015808&type=1', '301293', 'Health Mate', '4040200', '2011-06-25 08:30:08 -0700', 'count', '30.3395', '2019-06-27 22:55:10 -0700', '2011-06-26 07:47:51 -0700', '0', '4.4.2', '2011-06-26 14:48:27 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1309099671&type=1', '301293', 'Health Mate', '4040200', '2011-06-26 07:47:51 -0700', 'count', '30.2315', '2019-06-27 22:55:10 -0700', '2011-06-28 08:48:26 -0700', '0', '4.4.2', '2011-06-28 15:49:13 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1309276106&type=1', '301293', 'Health Mate', '4040200', '2011-06-28 08:48:26 -0700', 'count', '30.0617', '2019-06-27 22:55:10 -0700', '2011-06-29 09:21:16 -0700', '0', '4.4.2', '2011-06-29 16:21:59 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1309364476&type=1', '301293', 'Health Mate', '4040200', '2011-06-29 09:21:16 -0700', 'count', '29.9537', '2019-06-27 22:55:10 -0700', '2011-06-30 08:41:46 -0700', '0', '4.4.2', '2011-06-30 15:42:30 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1309448506&type=1', '301293', 'Health Mate', '4040200', '2011-06-30 08:41:46 -0700', 'count', '29.8302', '2019-06-27 22:55:10 -0700', '2011-07-01 09:05:28 -0700', '0', '4.4.2', '2011-07-01 16:06:24 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1309536328&type=1', '301293', 'Health Mate', '4040200', '2011-07-01 09:05:28 -0700', 'count', '29.8611', '2019-06-27 22:55:10 -0700', '2011-07-02 08:58:50 -0700', '0', '4.4.2', '2011-07-02 15:59:40 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1309622330&type=1', '301293', 'Health Mate', '4040200', '2011-07-02 08:58:50 -0700', 'count', '29.8765', '2019-06-27 22:55:10 -0700', '2011-07-04 09:33:43 -0700', '0', '4.4.2', '2011-07-04 16:34:19 +0000', 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'2012-06-21 08:07:33 -0700', 'count', '30.5864', '2019-06-27 22:55:10 -0700', '2012-08-08 10:02:22 -0700', '0', '4.4.2', '2012-08-08 17:03:02 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1344445342&type=1', '301293', 'Health Mate', '4040200', '2012-08-08 10:02:22 -0700', 'count', '30.6636', '2019-06-27 22:55:10 -0700', '2012-08-17 09:11:32 -0700', '0', '4.4.2', '2012-08-17 16:42:05 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1345219892&type=1', '301293', 'Health Mate', '4040200', '2012-08-17 09:11:32 -0700', 'count', '30.8796', '2019-06-27 22:55:10 -0700', '2012-09-10 08:27:21 -0700', '0', '4.4.2', '2012-09-10 15:28:07 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1347290841&type=1', '301293', 'Health Mate', '4040200', '2012-09-10 08:27:21 -0700', 'count', '31.034', '2019-06-27 22:55:10 -0700', '2012-09-17 08:35:33 -0700', '0', '4.4.2', '2012-09-17 15:35:33 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1347896133&type=1', '301293', 'Health Mate', '4040200', '2012-09-17 08:35:33 -0700', 'count', '30.7099', '2019-06-27 22:55:10 -0700', '2012-09-26 08:59:46 -0700', '0', '4.4.2', '2012-09-26 16:13:18 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1348675186&type=1', '301293', 'Health Mate', '4040200', '2012-09-26 08:59:46 -0700', 'count', '30.679', '2019-06-27 22:55:10 -0700', '2012-10-18 08:51:16 -0700', '0', '4.4.2', '2012-10-18 15:51:59 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1350575476&type=1', '301293', 'Health Mate', '4040200', '2012-10-18 08:51:16 -0700', 'count', '30.7716', '2019-06-27 22:55:10 -0700', '2012-11-15 08:54:57 -0700', '0', '4.4.2', '2012-11-15 15:55:58 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1352994897&type=1', '301293', 'Health Mate', '4040200', '2012-11-15 08:54:57 -0700', 'count', '31.0802', '2019-06-27 22:55:10 -0700', '2012-12-17 09:13:40 -0700', '0', '4.4.2', '2012-12-17 16:20:03 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1355760820&type=1', '301293', 'Health Mate', '4040200', '2012-12-17 09:13:40 -0700', 'count', '29.784', '2019-06-27 22:55:10 -0700', '2012-12-19 11:09:55 -0700', '0', '4.4.2', '2012-12-19 18:10:37 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1355940595&type=1', '301293', 'Health Mate', '4040200', '2012-12-19 11:09:55 -0700', 'count', '29.6914', '2019-06-27 22:55:10 -0700', '2012-12-25 10:37:41 -0700', '0', '4.4.2', '2012-12-25 17:38:25 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1356457061&type=1', '301293', 'Health Mate', '4040200', '2012-12-25 10:37:41 -0700', 'count', '29.8765', '2019-06-27 22:55:10 -0700', '2013-01-01 10:44:02 -0700', '0', '4.4.2', '2013-01-01 17:44:46 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1357062242&type=1', '301293', 'Health Mate', '4040200', '2013-01-01 10:44:02 -0700', 'count', '30.0772', '2019-06-27 22:55:10 -0700', '2013-01-15 09:10:46 -0700', '0', '4.4.2', '2013-01-15 16:11:28 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1358266246&type=1', '301293', 'Health Mate', '4040200', '2013-01-15 09:10:46 -0700', 'count', '29.9691', '2019-06-27 22:55:10 -0700', '2013-01-20 11:03:39 -0700', '0', '4.4.2', '2013-01-20 18:04:22 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1358705019&type=1', '301293', 'Health Mate', '4040200', '2013-01-20 11:03:39 -0700', 'count', '30.108', '2019-06-27 22:55:10 -0700', '2013-01-30 08:56:30 -0700', '0', '4.4.2', '2013-01-30 15:57:14 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1359561390&type=1', '301293', 'Health Mate', '4040200', '2013-01-30 08:56:30 -0700', 'count', '30.0926', '2019-06-27 22:55:10 -0700', '2013-02-04 11:02:35 -0700', '0', '4.4.2', '2013-02-04 18:03:25 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1360000955&type=1', '301293', 'Health Mate', '4040200', '2013-02-04 11:02:35 -0700', 'count', '29.8148', '2019-06-27 22:55:10 -0700', '2013-02-07 09:07:06 -0700', '0', '4.4.2', '2013-02-07 16:07:49 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1360253226&type=1', '301293', 'Health Mate', '4040200', '2013-02-07 09:07:06 -0700', 'count', '30.1389', '2019-06-27 22:55:10 -0700', '2013-02-19 08:49:57 -0700', '0', '4.4.2', '2013-02-19 15:50:39 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1361288997&type=1', '301293', 'Health Mate', '4040200', '2013-02-19 08:49:57 -0700', 'count', '30.1235', '2019-06-27 22:55:10 -0700', '2013-03-02 11:20:54 -0700', '0', '4.4.2', '2013-03-02 18:21:38 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1362248454&type=1', '301293', 'Health Mate', '4040200', '2013-03-02 11:20:54 -0700', 'count', '30', '2019-06-27 22:55:10 -0700', '2013-04-23 08:05:30 -0700', '0', '4.4.2', '2013-04-23 15:06:59 +0000', 'withings-bd2://timeline/measure?user """"""
id=301293&date=1366729530&type=1', '301293', 'Health Mate', '4040200', '2013-04-23 08:05:30 -0700', 'count', '30.5247', '2019-06-27 22:55:10 -0700', '2013-05-09 09:49:18 -0700', '0', '4.4.2', '2013-05-09 16:50:02 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1368118158&type=1', '301293', 'Health Mate', '4040200', '2013-05-09 09:49:18 -0700', 'count', '30.4167', '2019-06-27 22:55:10 -0700', '2013-06-09 09:28:47 -0700', '0', '4.4.2', '2013-06-09 16:29:30 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1370795327&type=1', '301293', 'Health Mate', '4040200', '2013-06-09 09:28:47 -0700', 'count', '30.8333', '2019-06-27 22:55:10 -0700', '2013-07-09 08:00:17 -0700', '0', '4.4.2', '2013-07-09 15:01:00 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1373382017&type=1', '301293', 'Health Mate', '4040200', '2013-07-09 08:00:17 -0700', 'count', '30.8179', '2019-06-27 22:55:10 -0700', '2013-07-28 09:16:55 -0700', '0', '4.4.2', '2013-07-28 16:17:39 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1375028215&type=1', '301293', 'Health Mate', '4040200', '2013-07-28 09:16:55 -0700', 'count', '30.5556', '2019-06-27 22:55:10 -0700', '2013-09-13 09:22:19 -0700', '0', '4.4.2', '2013-09-13 16:23:08 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1379089339&type=1', '301293', 'Health Mate', '4040200', '2013-09-13 09:22:19 -0700', 'count', '30.9568', '2019-06-27 22:55:10 -0700', '2013-09-24 08:08:23 -0700', '0', '4.4.2', '2013-09-24 15:09:03 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1380035303&type=1', '301293', 'Health Mate', '4040200', '2013-09-24 08:08:23 -0700', 'count', '31.4352', '2019-06-27 22:55:10 -0700', '2013-10-01 08:15:13 -0700', '0', '4.4.2', '2013-10-01 15:15:57 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1380640513&type=1', '301293', 'Health Mate', '4040200', '2013-10-01 08:15:13 -0700', 'count', '31.2037', '2019-06-27 22:55:10 -0700', '2013-10-23 09:31:25 -0700', '0', '4.4.2', '2013-10-23 16:32:13 +0000', 'withings-bd2://timeline/measure?userid=301293&date=1382545885&type=1', '301293', 'Health Mate', '4040200', '2013-10-23 09:31:25 -0700', 'count', '31.8056']
```",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/9/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
519038979,MDU6SXNzdWU1MTkwMzg5Nzk=,10,Failed to import workout points,9599,closed,0,,,4,2019-11-07T04:50:22Z,2019-11-08T01:18:37Z,2019-11-08T01:18:37Z,MEMBER,,"I just ran the script and it failed to import any `workout_points`, though it did import `workouts`.",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/10/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
723838331,MDU6SXNzdWU3MjM4MzgzMzE=,11,export.xml file name varies with different language settings,572,closed,0,,,7,2020-10-17T20:07:18Z,2020-10-17T21:39:15Z,2020-10-17T21:14:10Z,NONE,,"The XML file exported from my phone has a Norwegian file name – `eksport.xml` 🙄
I can work around this by unpacking the zip and using `--xml`, but then I lose the workout points.
Perhaps this could be solved by `--localized-xml eksport.xml`? Alternatively just fall back to the first XML file in the root folder of the zip.
",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/11/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
727848625,MDU6SXNzdWU3Mjc4NDg2MjU=,12,"Some workout columns should be float, not text",9599,open,0,,,4,2020-10-23T02:47:02Z,2022-06-23T04:35:02Z,,MEMBER,,"Columns `duration`, `totalDistance` and `totalEnergyBurned` should be converted to float.
https://github.com/dogsheep/healthkit-to-sqlite/blob/71e36e1cf034b96de2a8e6652265d782d3fdf63b/healthkit_to_sqlite/utils.py#L50-L57",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/12/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
771608692,MDU6SXNzdWU3NzE2MDg2OTI=,14,UNIQUE constraint failed: workouts.id,1234956,open,0,,,5,2020-12-20T15:11:20Z,2023-07-10T14:46:52Z,,NONE,,"I'm getting an error on my initial attempt to import data:
```console
$ healthkit-to-sqlite 20201119\ healthkit\ export.zip healthkit.db
Importing from HealthKit [###################################-] 98% 00:00:01
Traceback (most recent call last):
File ""venv/bin/healthkit-to-sqlite"", line 8, in
sys.exit(cli())
File ""venv/lib/python3.9/site-packages/click/core.py"", line 829, in __call__
return self.main(*args, **kwargs)
File ""venv/lib/python3.9/site-packages/click/core.py"", line 782, in main
rv = self.invoke(ctx)
File ""venv/lib/python3.9/site-packages/click/core.py"", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File ""venv/lib/python3.9/site-packages/click/core.py"", line 610, in invoke
return callback(*args, **kwargs)
File ""venv/lib/python3.9/site-packages/healthkit_to_sqlite/cli.py"", line 57, in cli
convert_xml_to_sqlite(fp, db, progress_callback=bar.update, zipfile=zf)
File ""venv/lib/python3.9/site-packages/healthkit_to_sqlite/utils.py"", line 34, in convert_xml_to_sqlite
workout_to_db(el, db, zipfile)
File ""venv/lib/python3.9/site-packages/healthkit_to_sqlite/utils.py"", line 57, in workout_to_db
pk = db[""workouts""].insert(record, alter=True, hash_id=""id"").last_pk
File ""venv/lib/python3.9/site-packages/sqlite_utils/db.py"", line 1660, in insert
return self.insert_all(
File ""venv/lib/python3.9/site-packages/sqlite_utils/db.py"", line 1778, in insert_all
self.insert_chunk(
File ""venv/lib/python3.9/site-packages/sqlite_utils/db.py"", line 1588, in insert_chunk
result = self.db.execute(query, params)
File ""venv/lib/python3.9/site-packages/sqlite_utils/db.py"", line 213, in execute
return self.conn.execute(sql, parameters)
sqlite3.IntegrityError: UNIQUE constraint failed: workouts.id
```",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/14/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
836063389,MDU6SXNzdWU4MzYwNjMzODk=,17,Datetime columns are not properly formatted to be recognizes as datetime,1234956,open,0,,,0,2021-03-19T14:33:04Z,2021-03-19T14:33:04Z,,NONE,,"
Currently, the datetimes are formatted in a way that is not recognized by datasette-vega for plotting with a `Date/time` type for the axis.
For example, if you have datasette running locally with `datasette-vega` installed and have a database that includes resting heart rate:
```
http://localhost:8001/healthkit/rRestingHeartRate#g.mark=line&g.x_column=startDate&g.x_type=temporal&g.y_column=value&g.y_type=quantitative
```
The plot is blank unless you choose `Label` as the type for the date data.
The `startDate` (and `creationDate` and `endDate`) columns appear like: `2019-11-14 18:22:18 -0700`
If instead the format for this column is changed slightly: `2019-11-14T18:22:18-07:00` they are recognized as proper dates and the charting works as expected.
I have a PR that addresses this issue, will submit shortly.",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/17/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
975158266,MDU6SXNzdWU5NzUxNTgyNjY=,19,table activity_summary has no column named appleMoveTime,9599,closed,0,,,0,2021-08-20T00:46:44Z,2021-08-20T00:54:34Z,2021-08-20T00:54:34Z,MEMBER,,"Got this error today against a fresh export:
table activity_summary has no column named appleMoveTime
",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/19/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed
975166271,MDU6SXNzdWU5NzUxNjYyNzE=,20,Add index on workout_points.date,9599,open,0,,,2,2021-08-20T01:08:04Z,2021-08-20T01:12:48Z,,MEMBER,,"Sorting that by date makes sense for seeing most recent points, and my DB has 2.5m points in so it's an expensive sort!",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/20/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
977128935,MDU6SXNzdWU5NzcxMjg5MzU=,21,Duplicate Column,32016596,open,0,,,1,2021-08-23T15:00:44Z,2021-08-23T17:00:59Z,,NONE,,"Hey, thank you for this repo!
When I try to convert my export, I get a multiple column error. Here is the stack trace:
```sh
(.venv) (base) computer:bodyweight_app user$ healthkit-to-sqlite ./data/Health_export.zip ./data/healthkit.db
Importing from HealthKit [###############################-----] 87% 00:00:22
Traceback (most recent call last):
File ""/MyProject/.venv/bin/healthkit-to-sqlite"", line 10, in
sys.exit(cli())
File ""/MyProject/.venv/lib/python3.7/site-packages/click/core.py"", line 829, in __call__
return self.main(*args, **kwargs)
File ""/MyProject/.venv/lib/python3.7/site-packages/click/core.py"", line 782, in main
rv = self.invoke(ctx)
File ""/MyProject/.venv/lib/python3.7/site-packages/click/core.py"", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File ""/MyProject/.venv/lib/python3.7/site-packages/click/core.py"", line 610, in invoke
return callback(*args, **kwargs)
File ""/MyProject/.venv/lib/python3.7/site-packages/healthkit_to_sqlite/cli.py"", line 57, in cli
convert_xml_to_sqlite(fp, db, progress_callback=bar.update, zipfile=zf)
File ""/MyProject/.venv/lib/python3.7/site-packages/healthkit_to_sqlite/utils.py"", line 41, in convert_xml_to_sqlite
write_records(records, db)
File ""/MyProject/.venv/lib/python3.7/site-packages/healthkit_to_sqlite/utils.py"", line 146, in write_records
batch_size=50,
File ""/MyProject/.venv/lib/python3.7/site-packages/sqlite_utils/db.py"", line 2579, in insert_all
extracts=extracts,
File ""/MyProject/.venv/lib/python3.7/site-packages/sqlite_utils/db.py"", line 1246, in create
extracts=extracts,
File ""/MyProject/.venv/lib/python3.7/site-packages/sqlite_utils/db.py"", line 767, in create_table
self.execute(sql)
File ""/MyProject/.venv/lib/python3.7/site-packages/sqlite_utils/db.py"", line 421, in execute
return self.conn.execute(sql)
sqlite3.OperationalError: duplicate column name: metadata_Meal
```",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/21/reactions"", ""total_count"": 5, ""+1"": 5, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
1515883470,I_kwDOC8tyDs5aWovO,24,DOC: xml.etree.ElementTree.ParseError due to healthkit version 12 ,6231413,open,0,,,2,2023-01-01T23:00:38Z,2023-03-30T10:17:31Z,,NONE,,"Hi @simonw
I hope you find this issue ok, the idea is provide some documentation to other users like me about how to solve this problem and save some time.
Following the instructions from the `README.md` I've faced this error:
```bash
(venv) mgreco@pop-os apple-health master* (23:44|0s)
$ healthkit-to-sqlite apple_health_export/export.xml healthkit.db --xml
Importing from HealthKit [------------------------------------] 0%
Traceback (most recent call last):
File ""/home/mgreco/github/mmngreco/apple-health/venv/bin/healthkit-to-sqlite"", line 33, in
sys.exit(load_entry_point('healthkit-to-sqlite', 'console_scripts', 'healthkit-to-sqlite')())
File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/site-packages/click/core.py"", line 1130, in __call__
return self.main(*args, **kwargs)
File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/site-packages/click/core.py"", line 1055, in main
rv = self.invoke(ctx)
File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/site-packages/click/core.py"", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/site-packages/click/core.py"", line 760, in invoke
return __callback(*args, **kwargs)
File ""/home/mgreco/github/mmngreco/apple-health/.deps/healthkit-to-sqlite/healthkit_to_sqlite/cli.py"", line 57, in cli
convert_xml_to_sqlite(fp, db, progress_callback=bar.update, zipfile=zf)
File ""/home/mgreco/github/mmngreco/apple-health/.deps/healthkit-to-sqlite/healthkit_to_sqlite/utils.py"", line 25, in convert_xml_to_sqlite
for tag, el in find_all_tags(
File ""/home/mgreco/github/mmngreco/apple-health/.deps/healthkit-to-sqlite/healthkit_to_sqlite/utils.py"", line 12, in find_all_tags
for event, el in parser.read_events():
File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/xml/etree/ElementTree.py"", line 1324, in read_events
raise event
File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/xml/etree/ElementTree.py"", line 1296, in feed
self._parser.feed(data)
xml.etree.ElementTree.ParseError: syntax error: line 156, column 0
```
So, after debugging and searching on internet I found this useful link: https://discussions.apple.com/thread/254202523 (etresoft, the real hero). Which basically says that the xml given by the health app (healthkit version 12) has some bugs but fortunately, they can be solved with a couple of commads:
1. Uncompress the zip and move the new folder where `export.xml` is.
1. Create a `patch.txt` with the following content
```diff
--- export.xml 2022-09-18 15:17:09.000000000 -0400
+++ export-fixed.xml 2022-09-18 16:37:08.000000000 -0400
@@ -15,6 +15,7 @@
HKCharacteristicTypeIdentifierBiologicalSex CDATA #REQUIRED
HKCharacteristicTypeIdentifierBloodType CDATA #REQUIRED
HKCharacteristicTypeIdentifierFitzpatrickSkinType CDATA #REQUIRED
+ HKCharacteristicTypeIdentifierCardioFitnessMedicationsUse CDATA #IMPLIED
>
-
+
-
+
- device CDATA #IMPLIED
-
-
->
]>
```
1. Apply the path with the command: `patch < patch.txt`
1. Fix endDates with the command `sed 's/startDate/endDate/2' export.xml > export-fixed.xml`
1. Try again `healthkit-to-sqlite export-fixed.xml healthkit.db --xml`",197882382,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/24/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,