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  • datasette package --spatialite throws error during build · 4 ✖

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  • NONE · 4 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions issue performed_via_github_app
1319664697 https://github.com/simonw/datasette/issues/1900#issuecomment-1319664697 https://api.github.com/repos/simonw/datasette/issues/1900 IC_kwDOBm6k_c5OqHw5 rdmurphy 419145 2022-11-18T07:59:36Z 2022-11-18T08:00:38Z NONE

Okay, my final observations for the night! I've been pushing and pulling the various levers in utils/__init__.py to see what makes this work without hard-coding in something for arm64 and it seems that if I change /usr/lib/x86_64-linux-gnu/mod_spatialite.so here to just mod_spatialite it's happy.

Unfortunately cannot audit that for x86_64, but maybe that's a solution that'd be cross-arch compatible? It seems like it's the hard-coding of that path that's tripping it up.

(It was actually this comment from back in 2018 in an entirely unrelated repo that nudged me to try this, ha.)

 
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 datasette package --spatialite throws error during build 1452572348  
1319641636 https://github.com/simonw/datasette/issues/1900#issuecomment-1319641636 https://api.github.com/repos/simonw/datasette/issues/1900 IC_kwDOBm6k_c5OqCIk rdmurphy 419145 2022-11-18T07:27:26Z 2022-11-18T07:27:26Z NONE

Can confirm that my uname -a returns something different at the end:

root:xnu-8792.41.9~2/RELEASE_ARM64_T6000 arm64

I'm in arm64 land, you're in x86_64. I am admittedly very fuzzy on how this factors into Docker these days. Honestly thought this was one of the things Docker was suppose to help address. 🤔

 
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 datasette package --spatialite throws error during build 1452572348  
1319639462 https://github.com/simonw/datasette/issues/1900#issuecomment-1319639462 https://api.github.com/repos/simonw/datasette/issues/1900 IC_kwDOBm6k_c5OqBmm rdmurphy 419145 2022-11-18T07:24:19Z 2022-11-18T07:24:19Z NONE

Is it, uh, possible we are on different architectures? 😅 I'm using an Apple M1 Pro.

I jumped into a bash shell of an unmodified python:3.11.0-slim-bullseye container and manually ran apt-get update and installed libsqlite3-mod-spatialite. I don't end up with with mod_spatialite.so in /usr/lib/x86_64-linux-gnu/ — mine is in /usr/lib/aarch64-linux-gnu/.

I swapped that directory in here in a local copy of datasette and poof — it worked!

 
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 datasette package --spatialite throws error during build 1452572348  
1319596087 https://github.com/simonw/datasette/issues/1900#issuecomment-1319596087 https://api.github.com/repos/simonw/datasette/issues/1900 IC_kwDOBm6k_c5Op3A3 rdmurphy 419145 2022-11-18T06:16:33Z 2022-11-18T06:16:33Z NONE

Interesting! So I tried this locally using your copy of nps-spatialite.db and I got the same error. 🤔

``` ❯ datasette package nps-spatialite.db --spatialite [+] Building 27.5s (10/10) FINISHED
=> [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 622B 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for docker.io/library/python:3.11.0-slim-bullseye 0.9s => [internal] load build context 2.3s => => transferring context: 72.38MB 2.3s => CACHED [1/6] FROM docker.io/library/python:3.11.0-slim-bullseye@sha256:1cd45c5dad845af18d71745c017325725dc979571c1bbe625b67e6051533716c 0.0s => [2/6] COPY . /app 0.1s => [3/6] WORKDIR /app 0.0s => [4/6] RUN apt-get update && apt-get install -y python3-dev gcc libsqlite3-mod-spatialite && rm -rf /var/lib/apt/lists/* 18.5s => [5/6] RUN pip install -U datasette 4.9s => ERROR [6/6] RUN datasette inspect nps-spatialite.db --inspect-file inspect-data.json 0.7s

[6/6] RUN datasette inspect nps-spatialite.db --inspect-file inspect-data.json:

10 0.681 Traceback (most recent call last):

10 0.681 File "/usr/local/bin/datasette", line 8, in <module>

10 0.681 sys.exit(cli())

10 0.681 ^^^^^

10 0.681 File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1130, in call

10 0.682 return self.main(args, *kwargs)

10 0.682 ^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.682 File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1055, in main

10 0.682 rv = self.invoke(ctx)

10 0.682 ^^^^^^^^^^^^^^^^

10 0.682 File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1657, in invoke

10 0.682 return _process_result(sub_ctx.command.invoke(sub_ctx))

10 0.682 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.682 File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1404, in invoke

10 0.682 return ctx.invoke(self.callback, **ctx.params)

10 0.682 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.682 File "/usr/local/lib/python3.11/site-packages/click/core.py", line 760, in invoke

10 0.682 return __callback(args, *kwargs)

10 0.682 ^^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/site-packages/datasette/cli.py", line 164, in inspect

10 0.683 inspect_data = loop.run_until_complete(inspect_(files, sqlite_extensions))

10 0.683 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/asyncio/base_events.py", line 650, in run_until_complete

10 0.683 return future.result()

10 0.683 ^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/site-packages/datasette/cli.py", line 179, in inspect_

10 0.683 counts = await database.table_counts(limit=3600 * 1000)

10 0.683 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/site-packages/datasette/database.py", line 304, in table_counts

10 0.683 for table in await self.table_names():

10 0.683 ^^^^^^^^^^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/site-packages/datasette/database.py", line 342, in table_names

10 0.683 results = await self.execute(

10 0.683 ^^^^^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/site-packages/datasette/database.py", line 267, in execute

10 0.683 results = await self.execute_fn(sql_operation_in_thread)

10 0.683 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/site-packages/datasette/database.py", line 213, in execute_fn

10 0.683 return await asyncio.get_event_loop().run_in_executor(

10 0.683 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/concurrent/futures/thread.py", line 58, in run

10 0.683 result = self.fn(self.args, *self.kwargs)

10 0.683 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

10 0.683 File "/usr/local/lib/python3.11/site-packages/datasette/database.py", line 209, in in_thread

10 0.683 self.ds._prepare_connection(conn, self.name)

10 0.683 File "/usr/local/lib/python3.11/site-packages/datasette/app.py", line 593, in _prepare_connection

10 0.683 conn.execute("SELECT load_extension(?)", [extension])

10 0.683 sqlite3.OperationalError: /usr/lib/x86_64-linux-gnu/mod_spatialite.so.so: cannot open shared object file: No such file or directory

executor failed running [/bin/sh -c datasette inspect nps-spatialite.db --inspect-file inspect-data.json]: exit code: 1 ```

 
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 datasette package --spatialite throws error during build 1452572348  

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