id,node_id,number,title,user,user_label,state,locked,assignee,assignee_label,milestone,milestone_label,comments,created_at,updated_at,closed_at,author_association,pull_request,body,repo,repo_label,type,active_lock_reason,performed_via_github_app,reactions,draft,state_reason
771608692,MDU6SXNzdWU3NzE2MDg2OTI=,14,UNIQUE constraint failed: workouts.id,1234956,n8henrie,open,0,,,,,5,2020-12-20T15:11:20Z,2023-07-10T14:46:52Z,,NONE,,"I'm getting an error on my initial attempt to import data:

```console
$ healthkit-to-sqlite 20201119\ healthkit\ export.zip healthkit.db
Importing from HealthKit  [###################################-]   98%  00:00:01
Traceback (most recent call last):
  File ""venv/bin/healthkit-to-sqlite"", line 8, in <module>
    sys.exit(cli())
  File ""venv/lib/python3.9/site-packages/click/core.py"", line 829, in __call__
    return self.main(*args, **kwargs)
  File ""venv/lib/python3.9/site-packages/click/core.py"", line 782, in main
    rv = self.invoke(ctx)
  File ""venv/lib/python3.9/site-packages/click/core.py"", line 1066, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File ""venv/lib/python3.9/site-packages/click/core.py"", line 610, in invoke
    return callback(*args, **kwargs)
  File ""venv/lib/python3.9/site-packages/healthkit_to_sqlite/cli.py"", line 57, in cli
    convert_xml_to_sqlite(fp, db, progress_callback=bar.update, zipfile=zf)
  File ""venv/lib/python3.9/site-packages/healthkit_to_sqlite/utils.py"", line 34, in convert_xml_to_sqlite
    workout_to_db(el, db, zipfile)
  File ""venv/lib/python3.9/site-packages/healthkit_to_sqlite/utils.py"", line 57, in workout_to_db
    pk = db[""workouts""].insert(record, alter=True, hash_id=""id"").last_pk
  File ""venv/lib/python3.9/site-packages/sqlite_utils/db.py"", line 1660, in insert
    return self.insert_all(
  File ""venv/lib/python3.9/site-packages/sqlite_utils/db.py"", line 1778, in insert_all
    self.insert_chunk(
  File ""venv/lib/python3.9/site-packages/sqlite_utils/db.py"", line 1588, in insert_chunk
    result = self.db.execute(query, params)
  File ""venv/lib/python3.9/site-packages/sqlite_utils/db.py"", line 213, in execute
    return self.conn.execute(sql, parameters)
sqlite3.IntegrityError: UNIQUE constraint failed: workouts.id
```",197882382,healthkit-to-sqlite,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/14/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
1515883470,I_kwDOC8tyDs5aWovO,24,DOC: xml.etree.ElementTree.ParseError due to healthkit version 12 ,6231413,mmngreco,open,0,,,,,2,2023-01-01T23:00:38Z,2023-03-30T10:17:31Z,,NONE,,"Hi @simonw 

I hope you find this issue ok, the idea is provide some documentation to other users like me about how to solve this problem and save some time.

Following the instructions from the `README.md` I've faced this error:

```bash
(venv) mgreco@pop-os apple-health master* (23:44|0s)
$ healthkit-to-sqlite apple_health_export/export.xml healthkit.db --xml
Importing from HealthKit  [------------------------------------]    0%
Traceback (most recent call last):
  File ""/home/mgreco/github/mmngreco/apple-health/venv/bin/healthkit-to-sqlite"", line 33, in <module>
    sys.exit(load_entry_point('healthkit-to-sqlite', 'console_scripts', 'healthkit-to-sqlite')())
  File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/site-packages/click/core.py"", line 1130, in __call__
    return self.main(*args, **kwargs)
  File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/site-packages/click/core.py"", line 1055, in main
    rv = self.invoke(ctx)
  File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/site-packages/click/core.py"", line 1404, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/site-packages/click/core.py"", line 760, in invoke
    return __callback(*args, **kwargs)
  File ""/home/mgreco/github/mmngreco/apple-health/.deps/healthkit-to-sqlite/healthkit_to_sqlite/cli.py"", line 57, in cli
    convert_xml_to_sqlite(fp, db, progress_callback=bar.update, zipfile=zf)
  File ""/home/mgreco/github/mmngreco/apple-health/.deps/healthkit-to-sqlite/healthkit_to_sqlite/utils.py"", line 25, in convert_xml_to_sqlite
    for tag, el in find_all_tags(
  File ""/home/mgreco/github/mmngreco/apple-health/.deps/healthkit-to-sqlite/healthkit_to_sqlite/utils.py"", line 12, in find_all_tags
    for event, el in parser.read_events():
  File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/xml/etree/ElementTree.py"", line 1324, in read_events
    raise event
  File ""/home/mgreco/github/mmngreco/apple-health/venv/lib/python3.10/xml/etree/ElementTree.py"", line 1296, in feed
    self._parser.feed(data)
xml.etree.ElementTree.ParseError: syntax error: line 156, column 0
```

So, after debugging and searching on internet I found this useful link: https://discussions.apple.com/thread/254202523 (etresoft, the real hero). Which basically says that the xml given by the health app (healthkit version 12) has some bugs but  fortunately, they can be solved with a couple of commads:

1. Uncompress the zip and move the new folder where `export.xml` is.
1. Create a `patch.txt` with the following content

    ```diff
    --- export.xml	2022-09-18 15:17:09.000000000 -0400
    +++ export-fixed.xml	2022-09-18 16:37:08.000000000 -0400
    @@ -15,6 +15,7 @@
       HKCharacteristicTypeIdentifierBiologicalSex       CDATA #REQUIRED
       HKCharacteristicTypeIdentifierBloodType           CDATA #REQUIRED
       HKCharacteristicTypeIdentifierFitzpatrickSkinType CDATA #REQUIRED
    +  HKCharacteristicTypeIdentifierCardioFitnessMedicationsUse CDATA #IMPLIED
     >
     <!ELEMENT Record ((MetadataEntry|HeartRateVariabilityMetadataList)*)>
     <!ATTLIST Record
    @@ -39,7 +40,7 @@
       startDate     CDATA #REQUIRED
       endDate       CDATA #REQUIRED
     >
    -<!ELEMENT Workout ((MetadataEntry|WorkoutEvent|WorkoutRoute)*)>
    +<!ELEMENT Workout ((MetadataEntry|WorkoutEvent|WorkoutRoute|WorkoutStatistics)*)>
     <!ATTLIST Workout
       workoutActivityType   CDATA #REQUIRED
       duration              CDATA #IMPLIED
    @@ -63,7 +64,7 @@
       duration             CDATA #IMPLIED
       durationUnit         CDATA #IMPLIED
     >
    -<!ELEMENT WorkoutEvent EMPTY>
    +<!ELEMENT WorkoutEvent (MetadataEntry?)>
     <!ATTLIST WorkoutEvent
       type                 CDATA #REQUIRED
       date                 CDATA #REQUIRED
    @@ -79,6 +80,7 @@
       minimum              CDATA #IMPLIED
       maximum              CDATA #IMPLIED
       sum                  CDATA #IMPLIED
    +  unit                 CDATA #IMPLIED
     >
     <!ELEMENT WorkoutRoute ((MetadataEntry|FileReference)*)>
     <!ATTLIST WorkoutRoute
    @@ -153,6 +155,7 @@
       dateIssued       CDATA #REQUIRED
       expirationDate   CDATA #REQUIRED
       brand            CDATA #IMPLIED
    +>
     <!ELEMENT RightEye EMPTY>
     <!ATTLIST RightEye
       sphere           CDATA #IMPLIED
    @@ -203,13 +206,6 @@
       diameter         CDATA #IMPLIED
       diameterUnit     CDATA #IMPLIED
     >
    -  device           CDATA #IMPLIED
    -<!ELEMENT MetadataEntry EMPTY>
    -<!ATTLIST MetadataEntry
    -  key              CDATA #IMPLIED
    -  value            CDATA #IMPLIED
    ->
    ->
     ]>
     <HealthData>
      <ExportDate/>
    ```
1. Apply the path with the command: `patch < patch.txt`
1. Fix endDates with the command `sed 's/startDate/endDate/2' export.xml > export-fixed.xml`
1. Try again `healthkit-to-sqlite export-fixed.xml healthkit.db --xml`",197882382,healthkit-to-sqlite,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/24/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
727848625,MDU6SXNzdWU3Mjc4NDg2MjU=,12,"Some workout columns should be float, not text",9599,simonw,open,0,,,,,4,2020-10-23T02:47:02Z,2022-06-23T04:35:02Z,,MEMBER,,"Columns `duration`, `totalDistance` and `totalEnergyBurned` should be converted to float.

https://github.com/dogsheep/healthkit-to-sqlite/blob/71e36e1cf034b96de2a8e6652265d782d3fdf63b/healthkit_to_sqlite/utils.py#L50-L57",197882382,healthkit-to-sqlite,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/12/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
977128935,MDU6SXNzdWU5NzcxMjg5MzU=,21,Duplicate Column,32016596,FabianHertwig,open,0,,,,,1,2021-08-23T15:00:44Z,2021-08-23T17:00:59Z,,NONE,,"Hey, thank you for this repo!

When I try to convert my export, I get a multiple column error. Here is the stack trace:

```sh
(.venv) (base) computer:bodyweight_app user$ healthkit-to-sqlite ./data/Health_export.zip ./data/healthkit.db
Importing from HealthKit  [###############################-----]   87%  00:00:22
Traceback (most recent call last):
  File ""/MyProject/.venv/bin/healthkit-to-sqlite"", line 10, in <module>
    sys.exit(cli())
  File ""/MyProject/.venv/lib/python3.7/site-packages/click/core.py"", line 829, in __call__
    return self.main(*args, **kwargs)
  File ""/MyProject/.venv/lib/python3.7/site-packages/click/core.py"", line 782, in main
    rv = self.invoke(ctx)
  File ""/MyProject/.venv/lib/python3.7/site-packages/click/core.py"", line 1066, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File ""/MyProject/.venv/lib/python3.7/site-packages/click/core.py"", line 610, in invoke
    return callback(*args, **kwargs)
  File ""/MyProject/.venv/lib/python3.7/site-packages/healthkit_to_sqlite/cli.py"", line 57, in cli
    convert_xml_to_sqlite(fp, db, progress_callback=bar.update, zipfile=zf)
  File ""/MyProject/.venv/lib/python3.7/site-packages/healthkit_to_sqlite/utils.py"", line 41, in convert_xml_to_sqlite
    write_records(records, db)
  File ""/MyProject/.venv/lib/python3.7/site-packages/healthkit_to_sqlite/utils.py"", line 146, in write_records
    batch_size=50,
  File ""/MyProject/.venv/lib/python3.7/site-packages/sqlite_utils/db.py"", line 2579, in insert_all
    extracts=extracts,
  File ""/MyProject/.venv/lib/python3.7/site-packages/sqlite_utils/db.py"", line 1246, in create
    extracts=extracts,
  File ""/MyProject/.venv/lib/python3.7/site-packages/sqlite_utils/db.py"", line 767, in create_table
    self.execute(sql)
  File ""/MyProject/.venv/lib/python3.7/site-packages/sqlite_utils/db.py"", line 421, in execute
    return self.conn.execute(sql)
sqlite3.OperationalError: duplicate column name: metadata_Meal
```",197882382,healthkit-to-sqlite,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/21/reactions"", ""total_count"": 5, ""+1"": 5, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
975166271,MDU6SXNzdWU5NzUxNjYyNzE=,20,Add index on workout_points.date,9599,simonw,open,0,,,,,2,2021-08-20T01:08:04Z,2021-08-20T01:12:48Z,,MEMBER,,"Sorting that by date makes sense for seeing most recent points, and my DB has 2.5m points in so it's an expensive sort!",197882382,healthkit-to-sqlite,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/20/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,
836063389,MDU6SXNzdWU4MzYwNjMzODk=,17,Datetime columns are not properly formatted to be recognizes as datetime,1234956,n8henrie,open,0,,,,,0,2021-03-19T14:33:04Z,2021-03-19T14:33:04Z,,NONE,,"

Currently, the datetimes are formatted in a way that is not recognized by datasette-vega for plotting with a `Date/time` type for the axis. 

For example, if you have datasette running locally with `datasette-vega` installed and have a database that includes resting heart rate:

```
http://localhost:8001/healthkit/rRestingHeartRate#g.mark=line&g.x_column=startDate&g.x_type=temporal&g.y_column=value&g.y_type=quantitative
```

The plot is blank unless you choose `Label` as the type for the date data.

The `startDate` (and `creationDate` and `endDate`) columns appear like: `2019-11-14 18:22:18 -0700`

If instead the format for this column is changed slightly: `2019-11-14T18:22:18-07:00` they are recognized as proper dates and the charting works as expected.

I have a PR that addresses this issue, will submit shortly.",197882382,healthkit-to-sqlite,issue,,,"{""url"": ""https://api.github.com/repos/dogsheep/healthkit-to-sqlite/issues/17/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,