id,node_id,number,title,user,state,locked,assignee,milestone,comments,created_at,updated_at,closed_at,author_association,pull_request,body,repo,type,active_lock_reason,performed_via_github_app,reactions,draft,state_reason 1701018909,I_kwDOCGYnMM5lY30d,543,Tests broken on Windows due to new convert() lambda names,9599,closed,0,,,0,2023-05-08T22:11:29Z,2023-05-08T22:19:04Z,2023-05-08T22:19:04Z,OWNER,,"https://github.com/simonw/sqlite-utils/actions/runs/4920084038/jobs/8788501314 ```python sql = 'update [example] set [dt] = lambda_-9223371942137158589([dt]);' ``` From: - #526",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/543/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1516644980,I_kwDOCGYnMM5aZip0,520,rows_from_file() raises confusing error if file-like object is not in binary mode,9599,closed,0,,,3,2023-01-02T19:00:14Z,2023-05-08T22:08:07Z,2023-05-08T22:08:07Z,OWNER,,"I got this error: ``` File ""/Users/simon/Dropbox/Development/openai-to-sqlite/openai_to_sqlite/cli.py"", line 27, in embeddings rows, _ = rows_from_file(input) ^^^^^^^^^^^^^^^^^^^^^ File ""/Users/simon/.local/share/virtualenvs/openai-to-sqlite-jt4obeb2/lib/python3.11/site-packages/sqlite_utils/utils.py"", line 305, in rows_from_file first_bytes = buffered.peek(2048).strip() ^^^^^^^^^^^^^^^^^^^ ``` From this code: ```python @cli.command() @click.argument( ""db_path"", type=click.Path(file_okay=True, dir_okay=False, allow_dash=False), ) @click.option( ""-i"", ""--input"", type=click.File(""r""), default=""-"", ) def embeddings(db_path, input): ""Store embeddings for one or more text documents"" click.echo(""Here is some output"") db = sqlite_utils.Database(db_path) rows, _ = rows_from_file(input) print(list(rows)) ``` The error went away when I changed it to `type=click.File(""rb"")`. This should either be called out in the documentation or `rows_from_file()` should be fixed to handle text-mode files in addition to binary files.",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/520/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1279144769,I_kwDOCGYnMM5MPjNB,448,Reading rows from a file => AttributeError: '_io.StringIO' object has no attribute 'readinto',236907,closed,0,,,5,2022-06-21T21:48:27Z,2023-05-08T22:01:00Z,2023-05-08T22:01:00Z,NONE,,"Attempting to run the example given here (without extra bracket ;-): https://sqlite-utils.datasette.io/en/stable/python-api.html#reading-rows-from-a-file ``` from sqlite_utils.utils import rows_from_file import io rows, format = rows_from_file(io.StringIO(""id,name\n1,Cleo"")) print(list(rows), format) # Outputs [{'id': '1', 'name': 'Cleo'}] Format.CSV ``` Gives error ``` >""c:\Program Files\Python37\python.exe"" test2.py Traceback (most recent call last): File ""test2.py"", line 4, in rows, format = rows_from_file(io.StringIO(""id,name\n1,Cleo"")) File ""C:\Users\swood\Downloads\sqlite-utils-main-20220621\sqlite-utils-main\sqlite_utils\utils.py"", line 300, in rows_from_file first_bytes = buffered.peek(2048).strip() AttributeError: '_io.StringIO' object has no attribute 'readinto' ``` I am running Python on Windows. ``` >""c:\Program Files\Python37\python.exe"" Python 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 20:34:20) [MSC v.1916 64 bit (AMD64)] on win32 Type ""help"", ""copyright"", ""credits"" or ""license"" for more information. ```",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/448/reactions"", ""total_count"": 1, ""+1"": 1, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1575131737,I_kwDOCGYnMM5d4ppZ,525,Repeated calls to `Table.convert()` fail,167893,closed,0,,,4,2023-02-07T22:40:47Z,2023-05-08T21:59:41Z,2023-05-08T21:54:02Z,CONTRIBUTOR,,"## Summary When using the API, repeated calls to `Table.convert()` do not work correctly since all conversions quietly use the callable (function, lambda) from the first call to `convert()` only. Subsequent invocations with different callables use the callable from the first invocation only. ## Example ```python from sqlite_utils import Database db = Database(memory=True) table = db['table'] col = 'x' table.insert_all([{col: 1}]) print(table.get(1)) table.convert(col, lambda x: x*2) print(table.get(1)) def zeroize(x): return 0 #zeroize = lambda x: 0 #zeroize.__name__ = 'zeroize' table.convert(col, zeroize) print(table.get(1)) ``` Output: ``` {'x': 1} {'x': 2} {'x': 4} ``` Expected: ``` {'x': 1} {'x': 2} {'x': 0} ``` ## Explanation This is some relevant [documentation](https://github.com/simonw/sqlite-utils/blob/1491b66dd7439dd87cd5cd4c4684f46eb3c5751b/docs/python-api.rst#registering-custom-sql-functions:~:text=By%20default%20registering%20a%20function%20with%20the%20same%20name%20and%20number%20of%20arguments%20will%20have%20no%20effect). * `Table.convert()` takes a `Callable` to perform data conversion on a column * The `Callable` is passed to `Database.register_function()` * `Database.register_function()` uses the callable's `__name__` attribute for registration * (Aside: all lambdas have a `__name__` of ``: I thought this was the problem, and it was close, but not quite) * However `convert()` first wraps the callable by local function [`convert_value()`](https://github.com/simonw/sqlite-utils/blob/fc221f9b62ed8624b1d2098e564f525c84497969/sqlite_utils/db.py#L2661) * Consequently `register_function()` sees name `convert_value` for all invocations from `convert()` * `register_function()` silently ignores registrations using the same name, retaining only the first such registration There's a mismatch between the comments and the code: https://github.com/simonw/sqlite-utils/blob/fc221f9b62ed8624b1d2098e564f525c84497969/sqlite_utils/db.py#L404 but actually the existing function is returned/used instead (as the ""registering custom sql functions"" doc I linked above says too). Seems like this can be rectified to match the comment? ## Suggested fix I think there are four things: 1. The call to `register_function()` from `convert()`should have an explicit `name=` parameter (to continue using `convert_value()` and the progress bar). 2. For functions, this name can be the real function name. (I understand the sqlite api needs a name, and it's nice if those are recognizable names where possible). For lambdas would `'lambda-{uuid}'` or similar be acceptable? 3. `register_function()` really should throw an error on repeated attempts to register a duplicate (function, arity)-pair. 4. A test? I haven't looked at the test framework here but seems this should be testable. ## See also - #458 ",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/525/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1465194249,I_kwDOCGYnMM5XVRcJ,514,upsert of new row with check constraints fails,193185,closed,0,,,5,2022-11-26T16:12:23Z,2023-05-08T21:50:52Z,2023-05-08T21:50:51Z,NONE,,"(I originally opened this in https://github.com/simonw/datasette-insert/issues/20, but I see that that library depends on sqlite-utils) In the case of a new row, upsert first adds the row, specifying only its pkeys: https://github.com/simonw/sqlite-utils/blob/965ca0d5f5bffe06cc02cd7741344d1ddddf9d56/sqlite_utils/db.py#L2783-L2787 This means that a table with NON NULL (or other constraint) columns that aren't part of the pkey can't have new rows upserted.",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/514/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1044267332,I_kwDOCGYnMM4-PkFE,336,"sqlite-util tranform --column-order mangles columns of type ""timestamp""",536941,closed,0,,,1,2021-11-04T01:15:38Z,2023-05-08T21:13:38Z,2023-05-08T21:13:38Z,CONTRIBUTOR,,"Reproducible code below: ```bash > echo 'create table bar (baz text, created_at timestamp default CURRENT_TIMESTAMP)' | sqlite3 foo.db > sqlite3 foo.db SQLite version 3.36.0 2021-06-18 18:36:39 Enter "".help"" for usage hints. sqlite> .schema bar CREATE TABLE bar (baz text, created_at timestamp default CURRENT_TIMESTAMP); sqlite> .exit > sqlite-utils transform foo.db bar --column-order baz sqlite3 foo.db SQLite version 3.36.0 2021-06-18 18:36:39 Enter "".help"" for usage hints. sqlite> .schema bar CREATE TABLE IF NOT EXISTS ""bar"" ( [baz] TEXT, [created_at] FLOAT DEFAULT 'CURRENT_TIMESTAMP' ); sqlite> .exit > sqlite-utils transform foo.db bar --column-order baz > sqlite3 foo.db SQLite version 3.36.0 2021-06-18 18:36:39 Enter "".help"" for usage hints. sqlite> .schema bar CREATE TABLE IF NOT EXISTS ""bar"" ( [baz] TEXT, [created_at] FLOAT DEFAULT '''CURRENT_TIMESTAMP''' ); ``` ",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/336/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1432377191,I_kwDOCGYnMM5VYFdn,509,`sqlite-utils transform` breaks DEFAULT string values and STRFTIME(),2199875,closed,0,,,0,2022-11-02T02:32:23Z,2023-05-08T21:13:38Z,2023-05-08T21:13:38Z,NONE,,"Very nice library! Our team found sqlite-utils through @simonw's [comment on the ""Simple declarative schema migration for SQLite"" article](https://news.ycombinator.com/item?id=31249823), and we were excited to use it, but unfortunately `sqlite-utils transform` seems to break our DB. Running `sqlite-utils transform` to modify a column mangles their DEFAULT values: - Default string values are wrapped in extra single quotes - Function expressions such as [`STRFTIME()`](https://www.sqlite.org/lang_datefunc.html) are turned into strings! ------ Here are steps to reproduce: **Original database** ``` $ sqlite3 test.db << EOF CREATE TABLE mytable ( col1 TEXT DEFAULT 'foo', col2 TEXT DEFAULT (STRFTIME('%Y-%m-%d %H:%M:%f', 'NOW')) ) EOF $ sqlite3 test.db ""SELECT sql FROM sqlite_master WHERE name = 'mytable';"" CREATE TABLE mytable ( col1 TEXT DEFAULT 'foo', col2 TEXT DEFAULT (STRFTIME('%Y-%m-%d %H:%M:%f', 'NOW')) ) ``` **Modified database after sqlite-utils** ``` $ sqlite3 test.db ""INSERT INTO mytable DEFAULT VALUES; SELECT * FROM mytable;"" foo|2022-11-02 02:26:58.038 $ sqlite-utils transform test.db mytable --rename col1 renamedcol1 $ sqlite3 test.db ""SELECT sql FROM sqlite_master WHERE name = 'mytable';"" CREATE TABLE ""mytable"" ( [renamedcol1] TEXT DEFAULT '''foo''', [col2] TEXT DEFAULT 'STRFTIME(''%Y-%m-%d %H:%M:%f'', ''NOW'')' ) $ sqlite3 test.db ""INSERT INTO mytable DEFAULT VALUES; SELECT * FROM mytable;"" foo|2022-11-02 02:26:58.038 'foo'|STRFTIME('%Y-%m-%d %H:%M:%f', 'NOW') ``` (Related: #336)",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/509/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1700936245,I_kwDOCGYnMM5lYjo1,542,Remove `skip_false=True` and `--no-skip-false` in `sqlite-utils` 4.0,9599,open,0,,9374594,1,2023-05-08T21:04:28Z,2023-05-08T21:07:41Z,,OWNER,,"Following: - #527 The only reason I didn't remove fix this mis-feature entirely is that it represents a backwards incompatible change. I'll make that change in 4.0.",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/542/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",, 1595340692,I_kwDOCGYnMM5fFveU,530,"add ability to configure ""on delete"" and ""on update"" attributes of foreign keys:",536941,open,0,,,2,2023-02-22T15:44:14Z,2023-05-08T20:39:01Z,,CONTRIBUTOR,,"sqlite supports these, and it would be quite nice to be able to add them with sqlite-utils. https://www.sqlite.org/foreignkeys.html#fk_actions",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/530/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",, 1620254998,I_kwDOCGYnMM5gkyEW,532,Show more information when JSON can't be imported with sqlite-utils insert,83080728,closed,0,,,2,2023-03-12T06:41:44Z,2023-05-08T20:32:16Z,2023-05-08T20:32:02Z,NONE,,"I am currently trying to import the [JSON export of my data from Discord](https://support.discord.com/hc/en-us/articles/360004027692-Requesting-a-Copy-of-your-Data), specifically `activity/reporting/events-*.json` ``` sqlite-utils.exe insert test.db reporting events-2023-00000-of-00001.json [###################################-] 99% 00:00:00 Error: Invalid JSON - use --csv for CSV or --tsv for TSV files ``` Please show more information as to *why* this is invalid, if possible. I am using version 3.30 with Python 3.10 on Windows 11.",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/532/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1695428235,I_kwDOCGYnMM5lDi6L,538,`table.upsert_all` fails to write rows when `not_null` is present,1231935,closed,0,,,9,2023-05-04T07:30:38Z,2023-05-08T20:06:35Z,2023-05-08T19:27:02Z,NONE,,"I found an odd bug today, where calls to `table.upsert_all` don't write rows if you include the `not_null` kwarg. ## Repro Example ```py from sqlite_utils import Database db = Database(""upsert-test.db"") db[""comments""].upsert_all( [{""id"": 1, ""name"": ""david""}], pk=""id"", not_null=[""name""], ) assert list(db[""comments""].rows) # err! ``` The schema is correctly created: ```sql CREATE TABLE [comments] ( [id] INTEGER PRIMARY KEY, [name] TEXT NOT NULL ) ``` But no rows are created. Removing either the `not_null` kwargs works as expected, as does an `insert_all` call. ## Version Info - Python: `3.11.0` - sqlite-utils: `3.30` - sqlite: `3.39.5 2022-10-14`",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/538/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1700840265,I_kwDOCGYnMM5lYMNJ,541,Get tests to pass with `pytest -Werror`,9599,open,0,,,1,2023-05-08T19:57:23Z,2023-05-08T19:59:35Z,,OWNER,,"Inspired by: - #534",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/541/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",, 1622640374,I_kwDOCGYnMM5gt4b2,534, ResourceWarning: unclosed file,1244826,closed,0,,,1,2023-03-14T03:02:18Z,2023-05-08T19:56:29Z,2023-05-08T19:56:29Z,NONE,,"Issuing either ``` py -Wdefault -m sqlite_utils insert dogs.db dogs dogs0.csv --csv [#############-----------------------] 36% [####################################] 100%C:\Users\Doug\AppData\Local\Programs\Python\Python311\Lib\site-packages\sqlite_utils\cli.py:1187: ResourceWarning: unclosed file <_io.TextIOWrapper name='dogs0.csv' encoding='utf-8-sig'> insert_upsert_implementation( ResourceWarning: Enable tracemalloc to get the object allocation traceback ``` or ``` set pythonwarnings=default sqlite-utils insert dogs.db dogs dogs0.csv --csv [#############-----------------------] 36% [####################################] 100%C:\Users\Doug\AppData\Local\Programs\Python\Python311\Lib\site-packages\sqlite_utils\cli.py:1187: ResourceWarning: unclosed file <_io.TextIOWrapper name='dogs0.csv' encoding='utf-8-sig'> insert_upsert_implementation( ResourceWarning: Enable tracemalloc to get the object allocation traceback ``` exhibits a ResourceWarning indicating that the CSV file being loaded is not closed. sqlite-utils --version sqlite-utils, version 3.30 py --version Python 3.11.2 Windows Version 10.0.19045 Build 19045 SQLite version 3.41.0 2023-02-21 18:09:37 ",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/534/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed 1699184583,I_kwDOCGYnMM5lR3_H,540,sphinx.builders.linkcheck build error,9599,closed,0,,,4,2023-05-07T18:37:09Z,2023-05-08T04:56:13Z,2023-05-07T18:42:36Z,OWNER,,"https://readthedocs.org/projects/sqlite-utils/builds/20512693/ ``` Running Sphinx v6.2.1 Traceback (most recent call last): File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/site-packages/sphinx/registry.py"", line 442, in load_extension mod = import_module(extname) File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/importlib/__init__.py"", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File """", line 1014, in _gcd_import File """", line 991, in _find_and_load File """", line 975, in _find_and_load_unlocked File """", line 671, in _load_unlocked File """", line 783, in exec_module File """", line 219, in _call_with_frames_removed File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/site-packages/sphinx/builders/linkcheck.py"", line 20, in from requests import Response File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/site-packages/requests/__init__.py"", line 43, in import urllib3 File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/site-packages/urllib3/__init__.py"", line 38, in raise ImportError( ImportError: urllib3 v2.0 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with OpenSSL 1.0.2n 7 Dec 2017. See: https://github.com/urllib3/urllib3/issues/2168 The above exception was the direct cause of the following exception: Traceback (most recent call last): File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/site-packages/sphinx/cmd/build.py"", line 280, in build_main app = Sphinx(args.sourcedir, args.confdir, args.outputdir, File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/site-packages/sphinx/application.py"", line 225, in __init__ self.setup_extension(extension) File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/site-packages/sphinx/application.py"", line 404, in setup_extension self.registry.load_extension(self, extname) File ""/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/latest/lib/python3.8/site-packages/sphinx/registry.py"", line 445, in load_extension raise ExtensionError(__('Could not import extension %s') % extname, sphinx.errors.ExtensionError: Could not import extension sphinx.builders.linkcheck (exception: urllib3 v2.0 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with OpenSSL 1.0.2n 7 Dec 2017. See: https://github.com/urllib3/urllib3/issues/2168) Extension error: Could not import extension sphinx.builders.linkcheck (exception: urllib3 v2.0 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with OpenSSL 1.0.2n 7 Dec 2017. See: https://github.com/urllib3/urllib3/issues/2168) ```",140912432,issue,,,"{""url"": ""https://api.github.com/repos/simonw/sqlite-utils/issues/540/reactions"", ""total_count"": 0, ""+1"": 0, ""-1"": 0, ""laugh"": 0, ""hooray"": 0, ""confused"": 0, ""heart"": 0, ""rocket"": 0, ""eyes"": 0}",,completed