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  • sqlite-utils · 1 ✖
id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association pull_request body repo type active_lock_reason performed_via_github_app reactions draft state_reason
1839344979 I_kwDOCGYnMM5toi1T 582 Handling CSV/file input that contains NUL bytes betatim 1448859 open 0     0 2023-08-07T12:24:14Z 2023-08-07T12:24:14Z   NONE  

I was using sqlite-utils to create a DB from a CSV and it turns out the CSV contains a NUL byte.

When the processing reaches the line that contains the NUL an exception is raised.

I'm wondering if there is something that can be done in sqlite-utils to say "skip lines with encoding errors" or some such. I think it isn't super straightforward though as the exception comes from inside the csv module that does all the parsing.

Concretely the file is the KernelVersions.csv from https://www.kaggle.com/datasets/kaggle/meta-kaggle

This is the command and output: $ sqlite-utils insert --csv kaggle.db kaggle KernelVersions.csv [------------------------------------] 0% [#####################---------------] 60% 00:04:24Traceback (most recent call last): File "/home/foobar/miniconda/envs/meta-kaggle/bin/sqlite-utils", line 10, in <module> sys.exit(cli()) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/click/core.py", line 1128, in __call__ return self.main(*args, **kwargs) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/click/core.py", line 1053, in main rv = self.invoke(ctx) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/click/core.py", line 1659, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/click/core.py", line 1395, in invoke return ctx.invoke(self.callback, **ctx.params) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/click/core.py", line 754, in invoke return __callback(*args, **kwargs) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/sqlite_utils/cli.py", line 1223, in insert insert_upsert_implementation( File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/sqlite_utils/cli.py", line 1085, in insert_upsert_implementation db[table].insert_all( File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/sqlite_utils/db.py", line 3198, in insert_all chunk = list(chunk) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/sqlite_utils/db.py", line 3742, in fix_square_braces for record in records: File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/sqlite_utils/cli.py", line 1071, in <genexpr> docs = (decode_base64_values(doc) for doc in docs) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/sqlite_utils/cli.py", line 1068, in <genexpr> docs = (verify_is_dict(doc) for doc in docs) File "/home/foobar/miniconda/envs/meta-kaggle/lib/python3.10/site-packages/sqlite_utils/cli.py", line 1003, in <genexpr> docs = (dict(zip(headers, row)) for row in reader) _csv.Error: line contains NUL

 sqlite-utils 140912432 issue     
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