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- sqlite-utils · 504 ✖
id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | pull_request | body | repo | type | active_lock_reason | performed_via_github_app | reactions | draft | state_reason |
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1114543475 | I_kwDOCGYnMM5CbpVz | 388 | Link to stable docs from older versions | simonw 9599 | closed | 0 | 7 | 2022-01-26T01:55:46Z | 2023-03-26T23:43:12Z | 2022-01-26T02:00:22Z | OWNER | https://sqlite-utils.datasette.io/en/2.14.1/ isn't showing a link to the stable release right now. I should also apply the same fix I used for Datasette in: - https://github.com/simonw/datasette/issues/1608 TIL: https://til.simonwillison.net/readthedocs/link-from-latest-to-stable |
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1620516340 | I_kwDOCGYnMM5glx30 | 533 | ReadTheDocs error: not all arguments converted during string formatting | simonw 9599 | closed | 0 | 2 | 2023-03-12T21:21:05Z | 2023-03-12T21:25:33Z | 2023-03-12T21:25:33Z | OWNER | This came up as a failure running tests for: - #531 Traceback on https://readthedocs.org/projects/sqlite-utils/builds/19749348/ ``` File "/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/531/lib/python3.8/site-packages/docutils/parsers/rst/states.py", line 889, in interpreted nodes, messages2 = role_fn(role, rawsource, text, lineno, self) File "/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/531/lib/python3.8/site-packages/sphinx/ext/extlinks.py", line 103, in role title = caption % part TypeError: not all arguments converted during string formatting Exception occurred: File "/home/docs/checkouts/readthedocs.org/user_builds/sqlite-utils/envs/531/lib/python3.8/site-packages/sphinx/ext/extlinks.py", line 103, in role title = caption % part TypeError: not all arguments converted during string formatting ``` |
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1572766460 | I_kwDOCGYnMM5dvoL8 | 524 | Transformation type `--type DATETIME` | 4l1fe 21095447 | closed | 0 | 15 | 2023-02-06T15:18:42Z | 2023-02-15T12:10:54Z | 2023-02-15T12:10:54Z | NONE | Hey. Currently i do transformation with the type Is it possible to alter a column type to |
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1560651350 | I_kwDOCGYnMM5dBaZW | 523 | Feature request: trim all leading and trailing white space for all columns for all tables in a database | fgregg 536941 | open | 0 | 1 | 2023-01-28T02:40:10Z | 2023-01-28T02:41:14Z | CONTRIBUTOR | It's pretty common that i need to trim leading or trailing white space from lots of columns in a database a part of an initial ETL. I use the following recipe a lot, and it would be great to include this functionality into sqlite-utils
then something like:
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743384829 | MDExOlB1bGxSZXF1ZXN0NTIxMjg3OTk0 | 203 | changes to allow for compound foreign keys | drkane 1049910 | open | 0 | 7 | 2020-11-16T00:30:10Z | 2023-01-25T18:47:18Z | FIRST_TIME_CONTRIBUTOR | simonw/sqlite-utils/pulls/203 | Add support for compound foreign keys, as per issue #117 Not sure if this is the right approach. In particular I'm unsure about:
The PR also contains a minor related change that columns and tables are always quoted in foreign key definitions. |
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1550536442 | I_kwDOCGYnMM5ca076 | 521 | Custom JSON encoder | janrito 31504 | open | 0 | 0 | 2023-01-20T09:19:40Z | 2023-01-20T09:19:40Z | NONE | It would be nice if we could specify a custom encoder (and decoder) for types that will need extra deserialisation – e.g., sets, enums or sparse matrices – or even project-specific types |
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1000275035 | PR_kwDOCGYnMM4r7n-9 | 327 | Extract expand: Support JSON Arrays | phaer 101753 | closed | 0 | 0 | 2021-09-19T10:34:30Z | 2022-12-29T09:05:36Z | 2022-12-29T09:05:36Z | NONE | simonw/sqlite-utils/pulls/327 | Hi, I needed to extract data in JSON Arrays to normalize data imports. I've quickly hacked the following together based on #241 which refers to #239 where you, @simonw, wrote:
They way this works in my work is that many-to-many relationships are created for anything that maps to an dictionary in a list, and many-to-one relations for everything else (assumed to be scalar values). Not sure what the best approach here would be? Are many-to-one relationships are at all useful here? What do you think about this approach? I could try to add it to the cli interface and documentation if wanted. Thanks for this awesome piece of software in any case! :sun_with_face: |
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1373224657 | I_kwDOCGYnMM5R2b7R | 488 | `sqlite-utils transform` should set empty strings to null when converting text columns to integer/float | simonw 9599 | open | 0 | 5 | 2022-09-14T15:51:30Z | 2022-12-23T17:38:55Z | OWNER |
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1487764628 | I_kwDOCGYnMM5YrXyU | 518 | flake8 ValueError: Error code '#' supplied to 'extend-ignore' option... | simonw 9599 | closed | 0 | 0 | 2022-12-10T01:30:24Z | 2022-12-10T01:36:46Z | 2022-12-10T01:36:46Z | OWNER |
https://github.com/simonw/sqlite-utils/actions/runs/3662011265/jobs/6190770361 I think from this: https://github.com/simonw/sqlite-utils/blob/e660635cea6c32f4022818380b1e1ee88e7c93a6/setup.cfg#L1-L3 |
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1487757143 | I_kwDOCGYnMM5YrV9X | 517 | Drop support for Python 3.6 | simonw 9599 | closed | 0 | 1 | 2022-12-10T01:23:31Z | 2022-12-10T01:36:36Z | 2022-12-10T01:36:36Z | OWNER | CI has started failing for Python 3.6: https://github.com/simonw/sqlite-utils/actions/runs/3576322798 It's fixable by swiching away from But https://endoflife.date/python says that 3.6 end of life was almost 6 years ago, and end of security support nearly 1 year ago. So I'm OK dropping support entirely - Python 3.6 users will still be able to install version 3.30, just not any releases that come next. |
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1479914599 | I_kwDOCGYnMM5YNbRn | 516 | Feature request: output number of ignored/replaced rows for insert command | simonw 9599 | open | 0 | 4 | 2022-12-06T18:59:21Z | 2022-12-06T19:08:14Z | OWNER | https://hachyderm.io/@briandorsey/109468185742876820
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1434911255 | I_kwDOCGYnMM5VhwIX | 510 | Cannot enable FTS5 despite it being available | ar-jan 1176293 | closed | 0 | 3 | 2022-11-03T16:03:49Z | 2022-11-18T18:37:52Z | 2022-11-17T10:36:28Z | NONE | When I do FTS5 is however available and Python/SQLite versions do not seem to be the issue. I can manually create the FTS5 virtual table, and then Datasette also works with it from this same Python environment.
Any ideas what's happening and how to fix? |
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1430563092 | PR_kwDOCGYnMM5B6_6K | 508 | Allow surrogates in parameters | chapmanjacobd 7908073 | closed | 0 | 2 | 2022-10-31T22:11:49Z | 2022-11-17T15:11:16Z | 2022-10-31T22:55:36Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/508 | closes #507 https://dwheeler.com/essays/fixing-unix-linux-filenames.html :books: Documentation preview :books:: https://sqlite-utils--508.org.readthedocs.build/en/508/ |
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1453134846 | I_kwDOCGYnMM5WnRP- | 513 | Add or document streamlined workflow for importing Datasette csv / json exports | henry501 19328961 | open | 0 | 0 | 2022-11-17T10:54:47Z | 2022-11-17T10:54:47Z | NONE | I'm working on some small front-end enhancements to the laion-aesthetic-datasette project, and I wanted to partially populate a database directly using exports from the existing Datasette instance instead of downloading the parquet files and creating my own multi-GB database. There have been a number of small issues that are certainly related to my relative lack of familiarity with the toolkit, but that are still surprising. For example: a CSV export of the images table (http://laion-aesthetic.datasette.io/laion-aesthetic-6pls.csv?sql=select+rowid%2C+url%2C+text%2C+domain_id%2C+width%2C+height%2C+similarity%2C+punsafe%2C+pwatermark%2C+aesthetic%2C+hash%2C+index_level_0+from+images+order+by+random%28%29+limit+100) has nested single quotes, double quotes, and commas that aren't handled by rows_from_file. Similarly, the json output has to be manually transformed to add the column names and remove extraneous information before sqlite_utils can import it. I was able to work through these issues, but as an enhancement it would be really helpful to create or document a clear workflow that avoids the friction of this data transformation. |
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1450952393 | I_kwDOCGYnMM5We8bJ | 512 | mypy failures in CI | simonw 9599 | closed | 0 | 3 | 2022-11-16T06:22:48Z | 2022-11-16T07:49:51Z | 2022-11-16T07:49:50Z | OWNER | https://github.com/simonw/sqlite-utils/actions/runs/3472012235 failed on Python 3.11: Truncated output:
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1436539554 | I_kwDOCGYnMM5Vn9qi | 511 | [insert_all, upsert_all] IntegrityError: constraint failed | chapmanjacobd 7908073 | closed | 0 | 2 | 2022-11-04T19:21:48Z | 2022-11-04T22:59:54Z | 2022-11-04T22:54:09Z | CONTRIBUTOR | My understand is that ``` import argparse from pathlib import Path from xklb import db, utils from xklb.utils import log def parse_args() -> argparse.Namespace: parser = argparse.ArgumentParser() parser.add_argument("database") parser.add_argument("dbs", nargs="*") parser.add_argument("--upsert") parser.add_argument("--db", "-db", help=argparse.SUPPRESS) parser.add_argument("--verbose", "-v", action="count", default=0) args = parser.parse_args()
def merge_db(args, source_db): source_db = str(Path(source_db).resolve())
def merge_dbs(): args = parse_args() for s_db in args.dbs: merge_db(args, s_db) if name == "main": merge_dbs() ``` ``` $ lb-dev merge video.db tube_71.db --upsert path -vv SQL: INSERT OR IGNORE INTO media VALUES(?); - params: ['https://archive.org/details/088ghostofachanceroygetssackedrevengeofthelivinglunchdvdripxvidphz'] ... File ~/.local/lib/python3.10/site-packages/sqlite_utils/db.py:3122, in Table.insert_all(self, records, pk, foreign_keys, column_order, not_null, defaults, batch_size, hash_id, hash_id_columns, alter, ignore, replace, truncate, extracts, conversions, columns, upsert, analyze) 3116 all_columns += [ 3117 column for column in record if column not in all_columns 3118 ] 3120 first = False -> 3122 self.insert_chunk( 3123 alter, 3124 extracts, 3125 chunk, 3126 all_columns, 3127 hash_id, 3128 hash_id_columns, 3129 upsert, 3130 pk, 3131 conversions, 3132 num_records_processed, 3133 replace, 3134 ignore, 3135 ) 3137 if analyze: 3138 self.analyze() File ~/.local/lib/python3.10/site-packages/sqlite_utils/db.py:2887, in Table.insert_chunk(self, alter, extracts, chunk, all_columns, hash_id, hash_id_columns, upsert, pk, conversions, num_records_processed, replace, ignore) 2885 for query, params in queries_and_params: 2886 try: -> 2887 result = self.db.execute(query, params) 2888 except OperationalError as e: 2889 if alter and (" column" in e.args[0]): 2890 # Attempt to add any missing columns, then try again File ~/.local/lib/python3.10/site-packages/sqlite_utils/db.py:484, in Database.execute(self, sql, parameters) 482 self._tracer(sql, parameters) 483 if parameters is not None: --> 484 return self.conn.execute(sql, parameters) 485 else: 486 return self.conn.execute(sql) IntegrityError: constraint failed
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473083260 | MDU6SXNzdWU0NzMwODMyNjA= | 50 | "Too many SQL variables" on large inserts | simonw 9599 | closed | 0 | 4 | 2019-07-25T21:43:31Z | 2022-11-04T14:38:36Z | 2019-07-28T11:59:33Z | OWNER | Reported here: https://github.com/dogsheep/healthkit-to-sqlite/issues/9 It looks like there's a default limit of 999 variables - we need to be smart about that, maybe dynamically lower the batch size based on the number of columns. |
sqlite-utils 140912432 | issue | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/50/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1429029604 | I_kwDOCGYnMM5VLULk | 506 | Make `cursor.rowcount` accessible (wontfix) | simonw 9599 | closed | 0 | 3 | 2022-10-30T21:51:55Z | 2022-11-01T17:37:47Z | 2022-11-01T17:37:13Z | OWNER | In building this Datasette feature on top of This isn't currently exposed by |
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1430325103 | I_kwDOCGYnMM5VQQdv | 507 | conn.execute: UnicodeEncodeError: 'utf-8' codec can't encode character | chapmanjacobd 7908073 | closed | 0 | 1 | 2022-10-31T18:49:51Z | 2022-11-01T00:40:17Z | 2022-11-01T00:40:16Z | CONTRIBUTOR | I'm not really sure what caused this and it happened in the middle of my program (after running for 35775 seconds).
This might be relevant: https://stackoverflow.com/questions/31898353/python-cant-encode-with-surrogateescape I'm going to try re-running with
``` |
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1405196044 | PR_kwDOCGYnMM5AmYzy | 499 | feat: recreate fts triggers after table transform | chapmanjacobd 7908073 | open | 0 | 2 | 2022-10-11T20:35:39Z | 2022-10-26T17:54:51Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/499 | https://github.com/simonw/sqlite-utils/pull/498 :books: Documentation preview :books:: https://sqlite-utils--499.org.readthedocs.build/en/499/ alternatively, |
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1423182778 | I_kwDOCGYnMM5U1Au6 | 505 | Release sqlite-utils 3.30 | simonw 9599 | closed | 0 | 2 | 2022-10-25T22:20:05Z | 2022-10-25T22:41:26Z | 2022-10-25T22:41:16Z | OWNER | sqlite-utils 140912432 | issue | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/505/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1386562662 | I_kwDOCGYnMM5SpURm | 493 | Tiny typographical error in install/uninstall docs | simonw 9599 | open | 0 | 3 | 2022-09-26T19:00:42Z | 2022-10-25T21:31:15Z | OWNER | Added in: - #483 I don't know how to fix this in Sphinx: I'm getting this: https://sqlite-utils.datasette.io/en/latest/cli.html#cli-install
But I want it to display Here's the code: https://github.com/simonw/sqlite-utils/blob/85247038f70d7eb2f3e272cfeaa4c44459cafba8/docs/cli.rst#L2125 |
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1392690202 | I_kwDOCGYnMM5TAsQa | 495 | Support JSON values returned from .convert() functions | mhalle 649467 | closed | 0 | 3 | 2022-09-30T16:33:49Z | 2022-10-25T21:23:37Z | 2022-10-25T21:23:28Z | NONE | When using the convert function on a JSON column, the result of the conversion function must be a string. If the return value is either a dict (object) or a list (array), the convert call will error out with an unhelpful user defined function exception. It makes sense that since the original column value was a string and required conversion to data structures, the result should be converted back into a JSON string as well. However, other functions auto-convert to JSON string representation, so the fact that convert doesn't could be surprising. At least the documentation should note this requirement, because the sqlite error messages won't readily reveal the issue. Jf only sqlite's JSON column type meant something :) |
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1393212964 | I_kwDOCGYnMM5TCr4k | 497 | column_names | chapmanjacobd 7908073 | closed | 0 | 1 | 2022-10-01T03:34:21Z | 2022-10-25T21:09:28Z | 2022-10-25T21:09:28Z | CONTRIBUTOR | It would be nice to have a Or if you could get one or all of the following syntax to work for both Database and Table that might be even better: Style 1
- Style 2
- maybe the table ones actually work but I'm too lazy to check. I just know that I have to do:
Edit: This is possible with |
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1423069384 | I_kwDOCGYnMM5U0lDI | 504 | db.close() method, calling db.conn.close() | simonw 9599 | closed | 0 | 1 | 2022-10-25T20:50:50Z | 2022-10-25T21:00:29Z | 2022-10-25T20:57:47Z | OWNER | I ended up needing to use I think |
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1423000702 | I_kwDOCGYnMM5U0UR- | 503 | test_recreate failing on Windows Python 3.11 | simonw 9599 | closed | 0 | 10 | 2022-10-25T20:01:41Z | 2022-10-25T20:47:34Z | 2022-10-25T20:45:43Z | OWNER | https://github.com/simonw/sqlite-utils/actions/runs/3323672128/jobs/5494726927 Related: - #502
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1422954582 | I_kwDOCGYnMM5U0JBW | 502 | Fix tests for Python 3.11 | simonw 9599 | closed | 0 | 1 | 2022-10-25T19:20:31Z | 2022-10-25T19:23:47Z | 2022-10-25T19:23:47Z | OWNER | The way errors are represented has changed: https://github.com/simonw/sqlite-utils/actions/runs/3323588047/jobs/5494127154 ``` ____ testquery_invalid_function ______ db_path = '/tmp/pytest-of-runner/pytest-0/test_query_invalid_function0/test.db'
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1413641049 | I_kwDOCGYnMM5UQnNZ | 501 | Tests failing due to updated tabulate library | simonw 9599 | closed | 0 | 4 | 2022-10-18T18:07:52Z | 2022-10-18T18:23:40Z | 2022-10-18T18:23:40Z | OWNER | Failure here: https://github.com/simonw/sqlite-utils/actions/runs/3275786702/jobs/5391063221 I figured out the problem:
+- |
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1413610718 | I_kwDOCGYnMM5UQfze | 500 | Turn --flatten into a documented utility function | simonw 9599 | closed | 0 | 4 | 2022-10-18T17:43:36Z | 2022-10-18T18:02:10Z | 2022-10-18T18:00:40Z | OWNER | The |
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1404013495 | PR_kwDOCGYnMM5AicIh | 498 | fix: enable-fts permanently save triggers | chapmanjacobd 7908073 | closed | 0 | 2 | 2022-10-11T05:10:51Z | 2022-10-15T04:33:08Z | 2022-10-11T06:34:31Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/498 | I was wondering why my all my databases were giving wild search results. Turns out create_trigger was not sticking! Running :books: Documentation preview :books:: https://sqlite-utils--498.org.readthedocs.build/en/498/ |
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1361355564 | I_kwDOCGYnMM5RJKMs | 482 | balanced table default column_order | chapmanjacobd 7908073 | closed | 0 | 1 | 2022-09-05T03:00:18Z | 2022-10-10T17:43:02Z | 2022-09-06T20:17:27Z | CONTRIBUTOR | Is there any performance or size difference with column order in SQLITE ? similar to this https://www.cybertec-postgresql.com/en/column-order-in-postgresql-does-matter/ It might be interesting to have an option to create with an optimized column order. I'm assuming this would look something like INTEGER columns, REAL columns, BLOB columns, TEXT columns, NULL columns. NULL columns at the end because they are more likely to be TEXT and it is impossible to know if they will become INTEGER (Of course, any schema evolution would reduce optimization but maybe column order could also be re-evaluated when schema changes) edit: this is easy to accomplish with the existing
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1149661489 | I_kwDOCGYnMM5EhnEx | 409 | `with db:` for transactions | simonw 9599 | open | 0 | 3 | 2022-02-24T19:22:06Z | 2022-10-01T03:42:50Z | OWNER | This can be a documented wrapper around |
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1386593843 | I_kwDOCGYnMM5Spb4z | 494 | Document how to use Just | simonw 9599 | closed | 0 | 2 | 2022-09-26T19:25:12Z | 2022-09-26T19:32:36Z | 2022-09-26T19:26:39Z | OWNER | I'm using https://github.com/simonw/sqlite-utils/blob/afbd2b2cba45cccb305c3d4638d18db4dd3d4bbd/Justfile#L1-L24 |
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1363765916 | I_kwDOCGYnMM5RSWqc | 483 | `sqlite-utils install` command | simonw 9599 | closed | 0 | 2 | 2022-09-06T20:13:55Z | 2022-09-26T19:04:43Z | 2022-09-26T18:57:15Z | OWNER | With the addition of In addition to the existing This isn't easy if you installed the tool with Datasette solved this problem with the
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1386530156 | I_kwDOCGYnMM5SpMVs | 492 | Idea: ability to pass extra variables to `--convert` scripts | simonw 9599 | open | 0 | 1 | 2022-09-26T18:30:45Z | 2022-09-26T18:33:19Z | OWNER | Got this idea from this example in https://jeqo.github.io/notes/2022-09-24-ingest-logs-sqlite/
This made me think: it might be neat if you could inject additional variable values into that script with extra command-line options, to make this kind of reuse easier. Something like this:
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1382457780 | I_kwDOCGYnMM5SZqG0 | 490 | Ability to insert multi-line files | jeqo 6180701 | closed | 0 | 4 | 2022-09-22T13:29:22Z | 2022-09-26T18:24:44Z | 2022-09-23T16:37:58Z | NONE | I was looking into how to parse application log files that contain multiline text (e.g. Java stack traces) into sqlite.
I can see that at the moment I wonder if this functionality would be useful for sqlite-utils. A similar approach to Elastic logstash/filebeat can be adopted: https://www.elastic.co/guide/en/beats/filebeat/current/multiline-examples.html Potential changes:
Or if this is achievable in a different way, please share. Thanks! |
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1082651698 | I_kwDOCGYnMM5Ah_Qy | 358 | Support for CHECK constraints | luxint 11597658 | open | 0 | 7 | 2021-12-16T21:19:45Z | 2022-09-25T07:15:59Z | NONE | Hi, I noticed the |
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1374939463 | I_kwDOCGYnMM5R8-lH | 489 | Ability to load JSON records held in a file with a single top level key that is a list of objects | simonw 9599 | open | 0 | 9 | 2022-09-15T18:46:03Z | 2022-09-15T20:56:10Z | OWNER | It's very common for JSON to look like this:
Right now you can't import this into But since this is so common, it would be neat if |
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1366512990 | PR_kwDOCGYnMM4-nBs9 | 486 | progressbar for inserts/upserts of all fileformats, closes #485 | MischaU8 99098079 | closed | 0 | 7 | 2022-09-08T14:58:02Z | 2022-09-15T20:40:03Z | 2022-09-15T20:37:51Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/486 | :books: Documentation preview :books:: https://sqlite-utils--486.org.readthedocs.build/en/486/ |
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1366423176 | I_kwDOCGYnMM5RcfaI | 485 | Progressbar not shown when inserting/upserting jsonlines file | MischaU8 99098079 | closed | 0 | 1 | 2022-09-08T14:13:18Z | 2022-09-15T20:39:52Z | 2022-09-15T20:37:52Z | CONTRIBUTOR | When inserting or upserting a jsonlines file, no progressbar is shown. Expected behavior is that, just like with .csv/.tsv files, also for a jsonlines file (--nl), unless --silent is provided, a progressbar is shown.
Currently |
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1128466114 | I_kwDOCGYnMM5DQwbC | 406 | Creating tables with custom datatypes | psychemedia 82988 | open | 0 | 5 | 2022-02-09T12:16:31Z | 2022-09-15T18:13:50Z | NONE | Via https://stackoverflow.com/a/18622264/454773 I note the ability to register custom handlers for novel datatypes that can map into and out of things like sqlite From a quick look and a quick play, I didn't spot a way to do this in For example: ```python Via https://stackoverflow.com/a/18622264/454773import sqlite3 import numpy as np import io def adapt_array(arr): """ http://stackoverflow.com/a/31312102/190597 (SoulNibbler) """ out = io.BytesIO() np.save(out, arr) out.seek(0) return sqlite3.Binary(out.read()) def convert_array(text): out = io.BytesIO(text) out.seek(0) return np.load(out) Converts np.array to TEXT when insertingsqlite3.register_adapter(np.ndarray, adapt_array) Converts TEXT to np.array when selectingsqlite3.register_converter("array", convert_array) ``` ```python from sqlite_utils import Database db = Database('test.db') Reset the database connection to used the parsed datatypesqlite_utils doesn't seem to support eg:Database('test.db', detect_types=sqlite3.PARSE_DECLTYPES)db.conn = sqlite3.connect(db_name, detect_types=sqlite3.PARSE_DECLTYPES) Create a table the old fashioned waybut using the new custom data typevector_table_create = """ CREATE TABLE dummy (title TEXT, vector array ); """ cur = db.conn.cursor() cur.execute(vector_table_create) sqlite_utils doesn't appear to support custom types (yet?!)The following errors on the "array" datatype""" db["dummy"].create({ "title": str, "vector": "array", }) """ ``` We can then add / retrieve records from the database where the datatype of the ```python import numpy as np db["dummy"].insert({'title':"test1", 'vector':np.array([1,2,3])}) for row in db.query("SELECT * FROM dummy"): print(row['title'], row['vector'], type(row['vector'])) """ test1 [1 2 3] <class 'numpy.ndarray'> """ ``` It would be handy to be able to do this idiomatically in |
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1367835380 | I_kwDOCGYnMM5Rh4L0 | 487 | Specify foreign key against compound key in other table | ryanfox 540968 | closed | 0 | 2 | 2022-09-09T13:32:09Z | 2022-09-11T04:00:44Z | 2022-09-11T04:00:44Z | NONE | When inserting rows via the library, is it possible to specify a foreign key to a compound primary key? For example, suppose I create a table:
And I want to add related data in another table:
Is it possible to specify a value for SQLite does support it: https://www.sqlite.org/foreignkeys.html#fk_composite |
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1363766973 | I_kwDOCGYnMM5RSW69 | 484 | Expose convert recipes to `sqlite-utils --functions` | simonw 9599 | open | 0 | 11 | 2022-09-06T20:15:08Z | 2022-09-07T19:09:52Z | OWNER |
It would be useful if the |
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1353441389 | I_kwDOCGYnMM5Qq-Bt | 477 | Conda Forge | thewchan 49702524 | closed | 0 | 2 | 2022-08-28T19:03:08Z | 2022-09-07T03:46:55Z | 2022-09-07T03:46:55Z | NONE | Hello! I have successfully put this package on to Conda Forge, and I have extending the invitation for the owner/maintainers of this package to be maintainers on Conda Forge as well. Let me know if you are interested! Thanks. https://github.com/conda-forge/sqlite-utils-feedstock |
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1352932716 | I_kwDOCGYnMM5QpB1s | 471 | sqlite-utils query --functions mechanism for registering extra functions | simonw 9599 | closed | 0 | 3.29 8355157 | 12 | 2022-08-27T03:57:53Z | 2022-09-07T03:46:26Z | 2022-08-27T05:10:57Z | OWNER | It would be really cool if you could register additional custom SQL functions for use with the ``` sqlite-utils data.db 'update images set domain = extract_domain(url)' --functions ' from urllib.parse import urlparse def extract_domain(url): return urlparse(url).netloc ' ``` Every function defined in that code block would be registered with the connection, unless the name began with an underscore. |
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816526538 | MDU6SXNzdWU4MTY1MjY1Mzg= | 239 | sqlite-utils extract could handle nested objects | simonw 9599 | open | 0 | 16 | 2021-02-25T15:10:28Z | 2022-09-03T23:46:02Z | OWNER | Imagine a table (imported from a nested JSON file) where one of the columns contains values that look like this:
The |
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1359604075 | I_kwDOCGYnMM5RCelr | 481 | Idea: `sqlite-utils create-table tablename --sql "select ..."` | simonw 9599 | open | 0 | 0 | 2022-09-02T01:41:24Z | 2022-09-02T01:42:08Z | OWNER | Could offer syntactic sugar for:
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1353074021 | I_kwDOCGYnMM5QpkVl | 474 | Add an option for specifying column names when inserting CSV data | hubgit 14294 | open | 0 | 3 | 2022-08-27T15:29:59Z | 2022-08-31T03:42:36Z | NONE | https://sqlite-utils.datasette.io/en/stable/cli.html#csv-files-without-a-header-row
It would be nice to be able to specify the column names when importing CSV/TSV without a header row, via an extra command line option. (renaming a column of a large table can take a long time, which makes it an inconvenient workaround) |
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1355433619 | PR_kwDOCGYnMM4-B7Mc | 480 | search_sql add include_rank option | chapmanjacobd 7908073 | closed | 0 | 4 | 2022-08-30T09:10:29Z | 2022-08-31T03:40:35Z | 2022-08-31T03:40:35Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/480 | I haven't tested this yet but wanted to get a heads-up whether this kind of change would be useful or if I should just duplicate the function and tweak it within my code :books: Documentation preview :books:: https://sqlite-utils--480.org.readthedocs.build/en/480/ |
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1355193529 | I_kwDOCGYnMM5Qxpy5 | 479 | OperationalError: cannot VACUUM from within a transaction | chapmanjacobd 7908073 | open | 0 | 0 | 2022-08-30T05:34:24Z | 2022-08-30T05:34:24Z | CONTRIBUTOR | Maybe when calling ``` 46 db["media"].optimize() # type: ignore ---> 47 db.vacuum() File ~/.local/lib/python3.10/site-packages/sqlite_utils/db.py:1047, in Database.vacuum(self)
1045 def vacuum(self):
1046 "Run a SQLite File ~/.local/lib/python3.10/site-packages/sqlite_utils/db.py:470, in Database.execute(self, sql, parameters) 468 return self.conn.execute(sql, parameters) 469 else: --> 470 return self.conn.execute(sql) OperationalError: cannot VACUUM from within a transaction ``` It might also be nice to add a sentence or two about how transactions are committed on the docs page. When I was swapping out my sqlite3 code for this library it was nice that everything was pretty much drop-in but I was/am unsure what to do about the places I explicitly call Related to https://github.com/simonw/sqlite-utils/issues/121 |
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1353481513 | I_kwDOCGYnMM5QrH0p | 478 | `sqlite-utils tables data.db table1 table2` | simonw 9599 | open | 0 | 1 | 2022-08-28T22:05:53Z | 2022-08-28T22:22:35Z | OWNER | The If you have a huge table in there then running it with Would be useful if it could accept an optional list of tables that it should execute against, as an alternative to the default of all of them. This should be a backwards compatible change. Current design is: https://sqlite-utils.datasette.io/en/stable/cli-reference.html#tables ``` Usage: sqlite-utils tables [OPTIONS] PATH List the tables in the database Example:
``` |
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1178546862 | I_kwDOCGYnMM5GPzKu | 420 | Document how to use a `--convert` function that runs initialization code first | strada 770231 | closed | 0 | 12 | 2022-03-23T19:07:36Z | 2022-08-28T11:34:37Z | 2022-03-25T20:07:33Z | NONE | When I have an insert command with transform like this:
I noticed as the number of rows increases the operation becomes quite slow, likely due to the creation of the |
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1353196970 | I_kwDOCGYnMM5QqCWq | 476 | Release notes for 3.29 | simonw 9599 | closed | 0 | 3.29 8355157 | 2 | 2022-08-27T23:21:21Z | 2022-08-28T04:07:15Z | 2022-08-28T04:07:03Z | OWNER | sqlite-utils 140912432 | issue | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/476/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1348169997 | I_kwDOCGYnMM5QW3EN | 467 | Mechanism for ensuring a table has all the columns | simonw 9599 | closed | 0 | 3.29 8355157 | 13 | 2022-08-23T15:50:23Z | 2022-08-27T23:19:41Z | 2022-08-27T23:17:56Z | OWNER | Suggested by @jefftriplett on Discord: https://discord.com/channels/823971286308356157/997738192360964156/1011655389063958600 |
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1348294436 | PR_kwDOCGYnMM49qP2V | 468 | db[table].create(..., transform=True) and create-table --transform | simonw 9599 | closed | 0 | 3.29 8355157 | 6 | 2022-08-23T17:27:58Z | 2022-08-27T23:17:55Z | 2022-08-27T23:17:55Z | OWNER | simonw/sqlite-utils/pulls/468 | Work in progress. Still needs documentation and tests (and to cover more cases of things that might have changed). Refs: - #467 :books: Documentation preview :books:: https://sqlite-utils--468.org.readthedocs.build/en/468/ |
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1353189941 | I_kwDOCGYnMM5QqAo1 | 475 | table.default_values introspection property | simonw 9599 | closed | 0 | 3.29 8355157 | 1 | 2022-08-27T22:33:31Z | 2022-08-27T22:44:46Z | 2022-08-27T22:43:02Z | OWNER |
Originally posted by @simonw in https://github.com/simonw/sqlite-utils/issues/468#issuecomment-1229279539 |
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1199158210 | I_kwDOCGYnMM5HebPC | 423 | .extract() doesn't set foreign key when extracted columns contain NULL value | jlieth 37447552 | closed | 0 | 1 | 2022-04-10T20:05:30Z | 2022-08-27T14:45:04Z | 2022-08-27T14:45:04Z | NONE | I've run into an issue with I'm working with a database with music listening information. Currently it has one large table A simplified demonstration with just In [2]: db = sqlite_utils.Database(memory=True) In [3]: db["listens"].insert_all([ ...: {"id": 1, "track_title": "foo", "album_title": "bar"}, ...: {"id": 2, "track_title": "baz", "album_title": None} ...: ], pk="id") Out[3]: <Table listens (id, track_title, album_title)> ``` The track in the first row has an album, the second track doesn't. Now I extract album information into a separate column: ```ipython In [4]: db["listens"].extract(columns=["album_title"], table="albums", fk_column="album_id") Out[4]: <Table listens (id, track_title, album_id)> In [5]: list(db["albums"].rows) Out[5]: [{'id': 1, 'album_title': 'bar'}, {'id': 2, 'album_title': None}] In [6]: list(db["listens"].rows) Out[6]: [{'id': 1, 'track_title': 'foo', 'album_id': 1}, {'id': 2, 'track_title': 'baz', 'album_id': None}] ``` This behaves as expected -- the Now I want to extract the track information as well. Album information belongs to the track so I want to extract both columns to a new table. ```ipython In [7]: db["listens"].extract(columns=["track_title", "album_id"], table="tracks", fk_column="track_id") Out[7]: <Table listens (id, track_id)> In [8]: list(db["tracks"].rows) Out[8]: [{'id': 1, 'track_title': 'foo', 'album_id': 1}, {'id': 2, 'track_title': 'baz', 'album_id': None}] In [9]: list(db["listens"].rows) Out[9]: [{'id': 1, 'track_id': 1}, {'id': 2, 'track_id': None}] ``` Extracting to the Changing the order of extracts doesn't help. I poked around in the source a bit and I believe this line (essentially comparing |
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1309542173 | PR_kwDOCGYnMM47pwAb | 455 | in extract code, check equality with IS instead of = for nulls | fgregg 536941 | closed | 0 | 3 | 2022-07-19T13:40:25Z | 2022-08-27T14:45:03Z | 2022-08-27T14:45:03Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/455 | sqlite "IS" is equivalent to SQL "IS NOT DISTINCT FROM" closes #423 |
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1352953535 | PR_kwDOCGYnMM4950Az | 473 | Support entrypoints for `--load-extension` | simonw 9599 | closed | 0 | 1 | 2022-08-27T05:53:59Z | 2022-08-27T05:55:52Z | 2022-08-27T05:55:47Z | OWNER | simonw/sqlite-utils/pulls/473 | Refs #470 :books: Documentation preview :books:: https://sqlite-utils--473.org.readthedocs.build/en/473/ |
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1352932038 | I_kwDOCGYnMM5QpBrG | 470 | Upgrade `--load-extension` to accept entrypoints like Datasette | simonw 9599 | closed | 0 | 3.29 8355157 | 6 | 2022-08-27T03:53:20Z | 2022-08-27T05:55:49Z | 2022-08-27T05:55:48Z | OWNER | Imitate: - https://github.com/simonw/datasette/pull/1789 ``` would load default entrypoint like beforedatasette data.db --load-extension ext loads the extensions with the "sqlite3_foo_init" entrpointdatasette data.db --load-extension ext:sqlite3_foo_init loads the extensions with the "sqlite3_bar_init" entrpointdatasette data.db --load-extension ext:sqlite3_bar_init ``` |
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1352946135 | I_kwDOCGYnMM5QpFHX | 472 | Reuse the locals/globals fix from --functions for other code accepting options | simonw 9599 | closed | 0 | 3.29 8355157 | 2 | 2022-08-27T05:12:05Z | 2022-08-27T05:20:12Z | 2022-08-27T05:20:12Z | OWNER | I figured out a workaround for the ugly |
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1352931464 | I_kwDOCGYnMM5QpBiI | 469 | sqlite-utils rows --order option | simonw 9599 | closed | 0 | 3.29 8355157 | 1 | 2022-08-27T03:49:51Z | 2022-08-27T04:30:49Z | 2022-08-27T04:10:32Z | OWNER | For consistency with
I wanted to run |
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1320243134 | I_kwDOCGYnMM5OsU-- | 458 | Support custom names for registered functions | simonw 9599 | closed | 0 | 3.29 8355157 | 1 | 2022-07-28T00:13:00Z | 2022-08-27T03:56:01Z | 2022-07-28T00:13:57Z | OWNER | In this example: ```python @db.register_function def reverse_string(s): return "".join(reversed(list(s)))
``` There's currently no way to over-ride the automatically selected name for the SQL function. |
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1319881016 | PR_kwDOCGYnMM48Mmde | 457 | Link to installation instructions | simonw 9599 | closed | 0 | 3.29 8355157 | 2 | 2022-07-27T17:38:36Z | 2022-08-27T03:55:52Z | 2022-07-27T17:57:50Z | OWNER | simonw/sqlite-utils/pulls/457 | sqlite-utils 140912432 | pull | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/457/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1326087800 | PR_kwDOCGYnMM48hI-_ | 460 | Cross-link CLI to Python docs | simonw 9599 | closed | 0 | 4 | 2022-08-02T16:18:28Z | 2022-08-18T21:58:10Z | 2022-08-18T21:58:07Z | OWNER | simonw/sqlite-utils/pulls/460 | Work in progress, partly to test the ReadTheDocs preview link action. Refs: - #426 :books: Documentation preview :books:: https://readthedocs-preview--460.org.readthedocs.build/en/460/ |
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1334416486 | PR_kwDOCGYnMM488n6D | 463 | Use Read the Docs action v1 | humitos 244656 | closed | 0 | 1 | 2022-08-10T10:31:47Z | 2022-08-18T08:30:14Z | 2022-08-17T23:11:16Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/463 | Read the Docs repository was renamed from :books: Documentation preview :books:: https://sqlite-utils--463.org.readthedocs.build/en/463/ |
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1342357149 | PR_kwDOCGYnMM49Wsnq | 465 | beanbag-docutils>=2.0 | simonw 9599 | closed | 0 | 2 | 2022-08-17T22:41:39Z | 2022-08-17T23:38:07Z | 2022-08-17T23:38:02Z | OWNER | simonw/sqlite-utils/pulls/465 | Refs #464 |
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1338001039 | I_kwDOCGYnMM5PwEaP | 464 | Link from documentation to source code | simonw 9599 | closed | 0 | 5 | 2022-08-13T16:19:57Z | 2022-08-17T23:38:03Z | 2022-08-17T23:38:03Z | OWNER | Twitter conversation asking for ways to automate this here: https://twitter.com/simonw/status/1558260492015046656 |
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1342374388 | PR_kwDOCGYnMM49Wv9T | 466 | Use Read the Docs action v1 (#463) | simonw 9599 | closed | 0 | 0 | 2022-08-17T23:11:50Z | 2022-08-17T23:11:54Z | 2022-08-17T23:11:54Z | OWNER | simonw/sqlite-utils/pulls/466 | Read the Docs repository was renamed from |
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1326391841 | PR_kwDOCGYnMM48iLGF | 462 | Discord badge | simonw 9599 | closed | 0 | 2 | 2022-08-02T20:56:04Z | 2022-08-02T21:15:57Z | 2022-08-02T21:15:52Z | OWNER | simonw/sqlite-utils/pulls/462 | Also testing fix for: - https://github.com/readthedocs/readthedocs-preview/issues/10 :books: Documentation preview :books:: https://sqlite-utils--462.org.readthedocs.build/en/462/ |
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1326349129 | I_kwDOCGYnMM5PDntJ | 461 | Consider including animated SVG console demos | simonw 9599 | open | 0 | 1 | 2022-08-02T20:10:04Z | 2022-08-02T20:12:14Z | OWNER | I recorded this one using https://github.com/nbedos/termtosvg - with
|
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1324659241 | I_kwDOCGYnMM5O9LIp | 459 | Single quoted transform recipes on Windows do not work as expected | shakeel 19921 | open | 0 | 0 | 2022-08-01T16:14:54Z | 2022-08-01T16:14:54Z | CONTRIBUTOR | Trying to follow the tutorial for sqlite-utils and datasette https://datasette.io/tutorials/clean-data on Windows 11 OS
In the step to transform dates into ISO dates the quoted value ``` sqlite-utils convert manatees.db locations \ REPDATE created_date last_edited_date \ 'r.parsedatetime(value)' --dry-run 1975/01/31 00:00:00+00 --- becomes: r.parsedatetime(value) Would affect 13568 rows ``` However, if I change the code from single quotes to double quotes, it works as expected. ``` sqlite-utils convert manatees.db locations \ REPDATE created_date last_edited_date \ "r.parsedatetime(value)" --dry-run 1975/01/31 00:00:00+00 --- becomes: 1975-01-31T00:00:00+00:00 Would affect 13568 rows ``` Specifying the transform code recipe should work with single quotes on Windows. |
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1310243385 | I_kwDOCGYnMM5OGLo5 | 456 | feature request: pivot command | fgregg 536941 | open | 0 | 5 | 2022-07-20T00:58:08Z | 2022-07-20T17:50:50Z | CONTRIBUTOR | pivoting long-format table to wide-format tables is pretty common and kind of pain. would love to see this feature in sqlite-utils! |
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1292060682 | I_kwDOCGYnMM5NA0gK | 450 | Add --ignore option to more commands | simonw 9599 | closed | 0 | 9 | 2022-07-02T13:52:02Z | 2022-07-15T22:39:09Z | 2022-07-15T22:37:45Z | OWNER | As seen in https://sqlite-utils.datasette.io/en/stable/cli-reference.html#add-foreign-key Could make this TIL trick unnecessary: https://til.simonwillison.net/bash/ignore-errors |
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1298531653 | I_kwDOCGYnMM5NZgVF | 451 | Make sqlite_utils.utils.chunks a documented function | simonw 9599 | closed | 0 | 2 | 2022-07-08T06:01:04Z | 2022-07-15T22:09:34Z | 2022-07-15T21:59:33Z | OWNER | I want to use it in another project: https://github.com/simonw/sqlite-utils/blob/8a9fe6498faf783a1fdeb1793e661ad194a05267/sqlite_utils/utils.py#L471-L474 |
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1303169663 | I_kwDOCGYnMM5NrMp_ | 453 | 'unclosed file' warning when using insert_upsert_implementation from Python | makkus 311257 | closed | 0 | 1 | 2022-07-13T09:34:35Z | 2022-07-15T21:52:25Z | 2022-07-15T21:52:21Z | NONE | I'm using the The warning goes away when wrapping the code from this line in a try/finally block like:
I suspect Python closes the reference automatically when the sqlite-utils cli run is done, but since my code doesn't exit, I'm getting the warning. Alternatively, it'd be cool if the 'import csv/tsv' functionality could be added directly to the Database class. |
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1306548397 | I_kwDOCGYnMM5N4Fit | 454 | CLI command for duplicating tables | simonw 9599 | closed | 0 | 1 | 2022-07-15T21:31:27Z | 2022-07-15T21:48:23Z | 2022-07-15T21:45:51Z | OWNER | CLI equivalent of: - #449 |
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1279863844 | I_kwDOCGYnMM5MSSwk | 449 | Utilities for duplicating tables and creating a table with the results of a query | davidleejy 1690072 | closed | 0 | 4 | 2022-06-22T09:41:43Z | 2022-07-15T21:46:13Z | 2022-07-15T21:21:36Z | CONTRIBUTOR | is there a duplicate table functionality? Otherwise, I'd be happy to submit a PR. In sqlite3 it would look like: ```python import sqlite3 as sl con = sl.connect('prompt-tune.db') def db_duplicate_table(table_name, table_name_new, con=con):
# Duplicates table db_duplicate_table('orig_table', 'new_table') ``` |
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1299760627 | PR_kwDOCGYnMM47JUun | 452 | Add duplicate table feature | davidleejy 1690072 | closed | 0 | 1 | 2022-07-09T20:24:31Z | 2022-07-15T21:21:37Z | 2022-07-15T21:21:36Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/452 | This PR addresses a feature request raised in issue #449. Specifically this PR adds a functionality that lets users duplicate a table via:
Test added in file Happy to make changes to meet maintainers' feedback, if any. |
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1271426387 | I_kwDOCGYnMM5LyG1T | 444 | CSV `extras_key=` and `ignore_extras=` equivalents for CLI tool | simonw 9599 | open | 0 | 5 | 2022-06-14T22:22:47Z | 2022-07-07T16:39:18Z | OWNER |
Originally posted by @simonw in https://github.com/simonw/sqlite-utils/issues/440#issuecomment-1155767915 |
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1212701569 | I_kwDOCGYnMM5ISFuB | 427 | sqlite-utils convert date parsing recipe complains about trying to parse "*" | wdccdw 1385831 | closed | 0 | 1 | 2022-04-22T19:27:10Z | 2022-07-02T13:59:59Z | 2022-07-02T13:59:32Z | NONE | Missing values in my dataset are denoted by a single asterisk. I am trying to parse string dates into dates. This works fine for columns without missing values, but, when the column contains "*", I get the following: ``` $ sqlite-utils convert ${dbfile} details dob 'r.parsedate(value)' [------------------------------------] 0%Traceback (most recent call last): File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/sqlite_utils/db.py", line 2508, in convert_value return fn(v) File "<string>", line 2, in fn File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/sqlite_utils/recipes.py", line 8, in parsedate parser.parse(value, dayfirst=dayfirst, yearfirst=yearfirst).date().isoformat() File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/dateutil/parser/_parser.py", line 1368, in parse return DEFAULTPARSER.parse(timestr, **kwargs) File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/dateutil/parser/_parser.py", line 643, in parse raise ParserError("Unknown string format: %s", timestr) dateutil.parser._parser.ParserError: Unknown string format: * Traceback (most recent call last): File "/usr/local/bin/sqlite-utils", line 33, in <module> sys.exit(load_entry_point('sqlite-utils==3.25.1', 'console_scripts', 'sqlite-utils')()) File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/click/core.py", line 1128, in call return self.main(args, kwargs) File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/click/core.py", line 1053, in main rv = self.invoke(ctx) File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/click/core.py", line 1659, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/click/core.py", line 1395, in invoke return ctx.invoke(self.callback, ctx.params) File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/click/core.py", line 754, in invoke return __callback(args, **kwargs) File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/sqlite_utils/cli.py", line 2698, in convert db[table].convert( File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/sqlite_utils/db.py", line 2524, in convert self.db.execute(sql, where_args or []) File "/usr/local/Cellar/sqlite-utils/3.25.1/libexec/lib/python3.9/site-packages/sqlite_utils/db.py", line 458, in execute return self.conn.execute(sql, parameters) sqlite3.OperationalError: user-defined function raised exception ``` |
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455486286 | MDU6SXNzdWU0NTU0ODYyODY= | 26 | Mechanism for turning nested JSON into foreign keys / many-to-many | simonw 9599 | open | 0 | 14 | 2019-06-13T00:52:06Z | 2022-06-29T23:35:29Z | OWNER | The GitHub JSON APIs have a really interesting convention with respect to related objects. Consider https://api.github.com/repos/simonw/sqlite-utils/issues - here's a truncated subset:
Since both user and label have populated It would be really neat if Thanks to |
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1227571375 | I_kwDOCGYnMM5JK0Cv | 431 | Allow making m2m relation of a table to itself | rafguns 738408 | open | 0 | 3 | 2022-05-06T08:30:43Z | 2022-06-23T14:12:51Z | NONE | I am building a database, in which one of the tables has a many-to-many relationship to itself. As far as I can see, this is not (yet) possible using Example: suppose I have a table of people, and I want to store the information that John and Mary have two children, Michael and Suzy. It would be neat if I could do something like this: ```python from sqlite_utils import Database db = Database(memory=True) db["people"].insert({"name": "John"}, pk="name").m2m( "people", [{"name": "Michael"}, {"name": "Suzy"}], m2m_table="parent_child", pk="name" ) db["people"].insert({"name": "Mary"}, pk="name").m2m( "people", [{"name": "Michael"}, {"name": "Suzy"}], m2m_table="parent_child", pk="name" ) ``` But if I do that, the many-to-many table This could be solved by adding one or two keyword_arguments to |
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1277328147 | I_kwDOCGYnMM5MInsT | 446 | Use Just to automate running tests and linters locally | simonw 9599 | closed | 0 | 2 | 2022-06-20T19:51:09Z | 2022-06-21T19:28:35Z | 2022-06-20T19:54:50Z | OWNER | I keep committing code that fails additional tests like |
sqlite-utils 140912432 | issue | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/446/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1278571700 | I_kwDOCGYnMM5MNXS0 | 447 | Incorrect syntax highlighting in docs CLI reference | simonw 9599 | closed | 0 | 3 | 2022-06-21T14:53:10Z | 2022-06-21T18:48:47Z | 2022-06-21T18:48:46Z | OWNER | https://sqlite-utils.datasette.io/en/stable/cli-reference.html#insert It looks like Python keywords are being incorrectly highlighted here. |
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1269998342 | I_kwDOCGYnMM5LsqMG | 443 | Make `utils.rows_from_file()` a documented API | simonw 9599 | closed | 0 | 2 | 2022-06-13T21:53:24Z | 2022-06-20T19:49:37Z | 2022-06-14T20:12:46Z | OWNER |
Originally posted by @simonw in https://github.com/simonw/sqlite-utils/issues/440#issuecomment-1154385916 |
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1277295119 | I_kwDOCGYnMM5MIfoP | 445 | `sqlite_utils.utils.TypeTracker` should be a documented API | simonw 9599 | closed | 0 | 3 | 2022-06-20T19:08:28Z | 2022-06-20T19:49:02Z | 2022-06-20T19:46:58Z | OWNER | I've used it in a couple of external places now: |
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1250495688 | I_kwDOCGYnMM5KiQzI | 439 | Misleading progress bar against utf-16-le CSV input | frafra 4068 | open | 0 | 12 | 2022-05-27T08:34:49Z | 2022-06-15T03:53:43Z | NONE | The program crashes without any error.
|
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1224112817 | I_kwDOCGYnMM5I9nqx | 430 | Document how to use `PRAGMA temp_store` to avoid errors when running VACUUM against huge databases | rayvoelker 9308268 | open | 0 | 2 | 2022-05-03T13:33:58Z | 2022-06-14T23:26:37Z | NONE | I'm trying to figure out a way to get the Here's the bit that's causing the error, and the resulting error output: ```python combine these columns into 1 table "bib_properties" :best_titlebib_level_codemat_typematerial_codebest_authordb["circ_trans"].extract( ["best_title", "bib_level_code", "mat_type", "material_code", "best_author"], table="bib_properties", fk_column="bib_properties_id" ) db["circ_trans"].extract( ["call_number"], table="call_number", fk_column="call_number_id", rename={"call_number": "value"} ) ``` ```pythonOperationalError Traceback (most recent call last) Input In [17], in <cell line: 7>() 1 # combine these columns into 1 table "bib_properties" : 2 # best_title 3 # bib_level_code 4 # mat_type 5 # material_code 6 # best_author ----> 7 db["circ_trans"].extract( 8 ["best_title", "bib_level_code", "mat_type", "material_code", "best_author"], 9 table="bib_properties", 10 fk_column="bib_properties_id" 11 ) 13 db["circ_trans"].extract( 14 ["call_number"], 15 table="call_number", 16 fk_column="call_number_id", 17 rename={"call_number": "value"} 18 ) File ~/jupyter/venv/lib/python3.10/site-packages/sqlite_utils/db.py:1764, in Table.extract(self, columns, table, fk_column, rename) 1761 column_order.append(c.name) 1763 # Drop the unnecessary columns and rename lookup column -> 1764 self.transform( 1765 drop=set(columns), 1766 rename={magic_lookup_column: fk_column}, 1767 column_order=column_order, 1768 ) 1770 # And add the foreign key constraint 1771 self.add_foreign_key(fk_column, table, "id") File ~/jupyter/venv/lib/python3.10/site-packages/sqlite_utils/db.py:1526, in Table.transform(self, types, rename, drop, pk, not_null, defaults, drop_foreign_keys, column_order) 1524 with self.db.conn: 1525 for sql in sqls: -> 1526 self.db.execute(sql) 1527 # Run the foreign_key_check before we commit 1528 if pragma_foreign_keys_was_on: File ~/jupyter/venv/lib/python3.10/site-packages/sqlite_utils/db.py:465, in Database.execute(self, sql, parameters) 463 return self.conn.execute(sql, parameters) 464 else: --> 465 return self.conn.execute(sql) OperationalError: database or disk is full ``` This database is about 17G in total size, so I'm assuming the error is coming from the vacuum ... where i'm assuming it's maybe trying to do the temp storage in a location that doesn't have sufficient room. The disk space is more than ample on the host in question (1.8T is free in the directory where the sqlite db resides) The I'm trying to think if there's a way to set the ```python SET the temp file store to be a file ...print(db.execute('PRAGMA temp_store').fetchall()) print(db.execute('PRAGMA temp_store=FILE').fetchall()) print(db.execute('PRAGMA temp_store').fetchall()) the users home directory ...print(db.execute("PRAGMA temp_store_directory='/home/plchuser/'").fetchall()) print(db.execute("PRAGMA sqlite3_temp_directory='/home/plchuser/'").fetchall()) print(db.execute("PRAGMA temp_store_directory").fetchall())
print(db.execute("PRAGMA sqlite3_temp_directory").fetchall())
Here's the docs on the Temporary File Storage Locations https://www.sqlite.org/tempfiles.html |
sqlite-utils 140912432 | issue | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/430/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1243151184 | I_kwDOCGYnMM5KGPtQ | 434 | `detect_fts()` identifies the wrong table if tables have names that are subsets of each other | ryascott 559711 | closed | 0 | 3 | 2022-05-20T13:28:31Z | 2022-06-14T23:24:09Z | 2022-06-14T23:24:09Z | NONE | Windows 10 Python 3.9.6 When I was running a full text search through the Python library, I noticed that the query was being run on a different full text search table than the one I was trying to search. I took a look at the following function and noticed:
My database contains tables with similar names and %{table}% was matching another table that ended differently in its name. I have included a sample test that shows this occurring: I search for Marsupials in db["books"] and The Clue of the Broken Blade is returned. This occurs since the search for Marsupials was "successfully" done against db["booksb"] and rowid 1 is returned. "The Clue of the Broken Blade" has a rowid of 1 in db["books"] and this is what is returned from the search. ```python def test_fts_search_with_similar_table_names(fresh_db): db = Database(memory=True) db["books"].insert_all( [ { "title": "The Clue of the Broken Blade", "author": "Franklin W. Dixon", }, { "title": "Habits of Australian Marsupials", "author": "Marlee Hawkins", }, ] ) db["booksb"].insert( { "title": "Habits of Australian Marsupials", "author": "Marlee Hawkins", } )
``` |
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1250629388 | I_kwDOCGYnMM5KixcM | 440 | CSV files with too many values in a row cause errors | frafra 4068 | closed | 0 | 20 | 2022-05-27T10:54:44Z | 2022-06-14T22:23:01Z | 2022-06-14T20:12:46Z | NONE | Original title: csv.DictReader can have None as key In some cases, ```python url="https://artsdatabanken.no/Fab2018/api/export/csv" db = sqlite_utils.Database(":memory") with urlopen(url) as fab:
reader, _ = sqlite_utils.utils.rows_from_file(fab, encoding="utf-16le") Result:
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1236693079 | I_kwDOCGYnMM5JtnBX | 432 | Support `rows_where()`, `delete_where()` etc for attached alias databases | luxint 11597658 | open | 0 | 5 | 2022-05-16T06:38:58Z | 2022-06-14T22:16:48Z | NONE | Hi, I noticed Besides, |
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1257724585 | I_kwDOCGYnMM5K91qp | 441 | Combining `rows_where()` and `search()` to limit which rows are searched | betatim 1448859 | closed | 0 | 4 | 2022-06-02T06:01:55Z | 2022-06-14T21:57:57Z | 2022-06-14T21:54:38Z | NONE | What is the right way to limit a full text search query to some rows of a table? For example, I have a table that contains the following columns: I tried to combine My two questions:
1. is adding a Right now I am thinking I will make my own version of Bonus question: is this generally useful/something to add to sqlite-utils or too niche? |
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1269886084 | I_kwDOCGYnMM5LsOyE | 442 | `maximize_csv_field_size_limit()` utility function | simonw 9599 | closed | 0 | 2 | 2022-06-13T19:54:54Z | 2022-06-14T21:55:15Z | 2022-06-14T21:31:49Z | OWNER | This code here runs only if I found myself needing the same fix in another library: It should be a documented utility function. |
sqlite-utils 140912432 | issue | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/442/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1160182768 | I_kwDOCGYnMM5FJvvw | 412 | Optional Pandas integration | simonw 9599 | open | 0 | 13 | 2022-03-05T01:49:27Z | 2022-06-14T15:36:29Z | OWNER | It would be neat if there was a way to use this more seamlessly with Pandas, in particular Pandas dataframes - but without making Pandas a required dependency. |
sqlite-utils 140912432 | issue | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/412/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1244294227 | PR_kwDOCGYnMM44P4GG | 437 | docs to dogs | yurivish 114388 | closed | 0 | 1 | 2022-05-22T15:50:33Z | 2022-05-30T21:32:41Z | 2022-05-30T21:32:41Z | CONTRIBUTOR | simonw/sqlite-utils/pulls/437 | Fixes a typo. |
sqlite-utils 140912432 | pull | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/437/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1250161887 | I_kwDOCGYnMM5Kg_Tf | 438 | illegal UTF-16 surrogate | frafra 4068 | closed | 0 | 2 | 2022-05-26T22:49:52Z | 2022-05-27T08:21:53Z | 2022-05-27T08:21:53Z | NONE | I am trying to insert ``` sqlite-utils insert --csv --delimiter ";" --encoding="utf-16-le" --pk "Id" csv fremmedart test.db [------------------------------------] 0% Error: 'utf-16-le' codec can't decode bytes in position 98-99: illegal UTF-16 surrogate The input you provided uses a character encoding other than utf-8. You can fix this by passing the --encoding= option with the encoding of the file. If you do not know the encoding, running 'file filename.csv' may tell you. It's often worth trying: --encoding=latin-1 ``` I tried to convert the file using ``` sqlite-utils insert --csv --delimiter ";" --encoding=utf-8 --pk "Id" csv_utf8 fremmedart test.db [------------------------------------] 0% Error: 'utf-8' codec can't decode byte 0xd9 in position 99: invalid continuation byte The input you provided uses a character encoding other than utf-8. You can fix this by passing the --encoding= option with the encoding of the file. If you do not know the encoding, running 'file filename.csv' may tell you. It's often worth trying: --encoding=latin-1 ``` I have no issues reading such file using this Python code:
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1243715381 | I_kwDOCGYnMM5KIZc1 | 436 | Add "copy to clipboard" button to code examples in documentation | simonw 9599 | closed | 0 | 0 | 2022-05-20T21:53:23Z | 2022-05-20T21:57:53Z | 2022-05-20T21:57:53Z | OWNER | Follows: - #435 Imitates: - https://github.com/simonw/datasette/issues/1748 I'll use https://github.com/executablebooks/sphinx-copybutton - here's the Datasette commit: https://github.com/simonw/datasette/commit/1465fea4798599eccfe7e8f012bd8d9adfac3039 |
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1243704847 | I_kwDOCGYnMM5KIW4P | 435 | Switch to Furo documentation theme | simonw 9599 | closed | 0 | 2 | 2022-05-20T21:46:39Z | 2022-05-20T21:56:10Z | 2022-05-20T21:54:43Z | OWNER | sqlite-utils 140912432 | issue | { "url": "https://api.github.com/repos/simonw/sqlite-utils/issues/435/reactions", "total_count": 0, "+1": 0, "-1": 0, "laugh": 0, "hooray": 0, "confused": 0, "heart": 0, "rocket": 0, "eyes": 0 } |
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1173023272 | I_kwDOCGYnMM5F6uoo | 416 | Options for how `r.parsedate()` should handle invalid dates | mattkiefer 638427 | closed | 0 | 11 | 2022-03-17T23:29:55Z | 2022-05-03T21:36:49Z | 2022-03-21T04:01:39Z | NONE | Exceptions are normal expected behavior when typecasting an invalid format. However, r.parsedate() is really just re-formatting strings and keeping the type as text. So it may be better to print-and-pass on exception so the user can see a complete list of invalid values -- while also allowing for the parser to reformat the remaining valid values.
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Advanced export
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