{"id": 312662135, "node_id": "MDEwOlJlcG9zaXRvcnkzMTI2NjIxMzU=", "name": "kg-microbe", "full_name": "Knowledge-Graph-Hub/kg-microbe", "private": 0, "owner": {"value": 62400914, "label": "Knowledge-Graph-Hub"}, "html_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe", "description": "An instance of KG Hub to produce a knowledge graph for microbial data.", "fork": 0, "created_at": "2020-11-13T19:10:16Z", "updated_at": "2023-12-08T14:15:58Z", "pushed_at": "2023-12-06T07:15:07Z", "homepage": "http://kghub.org/kg-microbe/", "size": 88357, "stargazers_count": 14, "watchers_count": 14, "language": "Jupyter Notebook", "has_issues": 1, "has_projects": 1, "has_downloads": 1, "has_wiki": 1, "has_pages": 1, "forks_count": 3, "archived": 0, "disabled": 0, "open_issues_count": 39, "license": {"value": "bsd-3-clause", "label": "BSD 3-Clause \"New\" or \"Revised\" License"}, "topics": "[\"kg\", \"knowledge-graph\", \"microbes\", \"monarchinitiative\", \"semantic-web\"]", "forks": 3, "open_issues": 39, "watchers": 14, "default_branch": "master", "permissions": "{\"admin\": false, \"maintain\": false, \"push\": false, \"triage\": false, \"pull\": true}", "organization": {"value": 62400914, "label": "Knowledge-Graph-Hub"}, "temp_clone_token": "", "allow_squash_merge": null, "allow_merge_commit": null, "allow_rebase_merge": null, "delete_branch_on_merge": null, "network_count": 3, "subscribers_count": 3, "parent": null, "source": null, "allow_auto_merge": null, "allow_forking": 1, "visibility": "public", "is_template": 0, "template_repository": null, "allow_update_branch": null, "use_squash_pr_title_as_default": null, "web_commit_signoff_required": 0, "squash_merge_commit_message": null, "squash_merge_commit_title": null, "merge_commit_message": null, "merge_commit_title": null, "has_discussions": 0, "security_and_analysis": null} {"id": 584843480, "node_id": "R_kgDOItwA2A", "name": "ontogpt", "full_name": "monarch-initiative/ontogpt", "private": 0, "owner": {"value": 5161984, "label": "monarch-initiative"}, "html_url": "https://github.com/monarch-initiative/ontogpt", "description": "LLM-based ontological extraction tools, including SPIRES", "fork": 0, "created_at": "2023-01-03T16:53:25Z", "updated_at": "2023-09-13T20:14:33Z", "pushed_at": "2023-09-15T22:05:20Z", "homepage": "https://monarch-initiative.github.io/ontogpt/", "size": 34525, "stargazers_count": 336, "watchers_count": 336, "language": "Jupyter Notebook", "has_issues": 1, "has_projects": 1, "has_downloads": 1, "has_wiki": 1, "has_pages": 1, "forks_count": 42, "archived": 0, "disabled": 0, "open_issues_count": 50, "license": {"value": "bsd-3-clause", "label": "BSD 3-Clause \"New\" or \"Revised\" License"}, "topics": "[\"ai\", \"chat-gpt\", \"data-modeling\", \"gpt-3\", \"information-extraction\", \"language-models\", \"large-language-models\", \"linkml\", \"llm\", \"monarchinitiative\", \"named-entity-recognition\", \"ner\", \"nlp\", \"oaklib\", \"obofoundry\", \"relation-extraction\"]", "forks": 42, "open_issues": 50, "watchers": 336, "default_branch": "main", "permissions": "{\"admin\": false, \"maintain\": false, \"push\": false, \"triage\": false, \"pull\": true}", "organization": {"value": 5161984, "label": "monarch-initiative"}, "temp_clone_token": "", "allow_squash_merge": null, "allow_merge_commit": null, "allow_rebase_merge": null, "delete_branch_on_merge": null, "network_count": 42, "subscribers_count": 15, "parent": null, "source": null, "allow_auto_merge": null, "allow_forking": 1, "visibility": "public", "is_template": 0, "template_repository": null, "allow_update_branch": null, "use_squash_pr_title_as_default": null, "web_commit_signoff_required": 0, "squash_merge_commit_message": null, "squash_merge_commit_title": null, "merge_commit_message": null, "merge_commit_title": null, "has_discussions": 0, "security_and_analysis": null} {"id": 475072415, "node_id": "R_kgDOHFEHnw", "name": "ontology-access-kit", "full_name": "INCATools/ontology-access-kit", "private": 0, "owner": {"value": 20801739, "label": "INCATools"}, "html_url": "https://github.com/INCATools/ontology-access-kit", "description": "Ontology Access Kit: A python library and command line application for working with ontologies", "fork": 0, "created_at": "2022-03-28T15:50:45Z", "updated_at": "2023-09-08T18:33:07Z", "pushed_at": "2023-09-22T23:47:24Z", "homepage": "https://incatools.github.io/ontology-access-kit/", "size": 46105, "stargazers_count": 70, "watchers_count": 70, "language": "Jupyter Notebook", "has_issues": 1, "has_projects": 1, "has_downloads": 1, "has_wiki": 1, "has_pages": 1, "forks_count": 15, "archived": 0, "disabled": 0, "open_issues_count": 149, "license": {"value": "apache-2.0", "label": "Apache License 2.0"}, "topics": "[\"apis\", \"geneontology\", \"monarchinitiative\", \"oaklib\", \"obofoundry\", \"ontology\", \"ontology-api\", \"owl\", \"python\", \"rdf\", \"semantic-web\"]", "forks": 15, "open_issues": 149, "watchers": 70, "default_branch": "main", "permissions": "{\"admin\": false, \"maintain\": false, \"push\": false, \"triage\": false, \"pull\": true}", "organization": {"value": 20801739, "label": "INCATools"}, "temp_clone_token": "", "allow_squash_merge": null, "allow_merge_commit": null, "allow_rebase_merge": null, "delete_branch_on_merge": null, "network_count": 15, "subscribers_count": 13, "parent": null, "source": null, "allow_auto_merge": null, "allow_forking": 1, "visibility": "public", "is_template": 0, "template_repository": null, "allow_update_branch": null, "use_squash_pr_title_as_default": null, "web_commit_signoff_required": 0, "squash_merge_commit_message": null, "squash_merge_commit_title": null, "merge_commit_message": null, "merge_commit_title": null, "has_discussions": 1, "security_and_analysis": null} {"id": 645996391, "node_id": "R_kgDOJoEfZw", "name": "curate-gpt", "full_name": "monarch-initiative/curate-gpt", "private": 0, "owner": {"value": 5161984, "label": "monarch-initiative"}, "html_url": "https://github.com/monarch-initiative/curate-gpt", "description": "LLM-driven curation assist tool (pre-alpha)", "fork": 0, "created_at": "2023-05-27T00:56:51Z", "updated_at": "2023-09-02T21:02:26Z", "pushed_at": "2023-09-07T01:16:05Z", "homepage": "https://curategpt.io/", "size": 1813, "stargazers_count": 8, "watchers_count": 8, "language": "Python", "has_issues": 1, "has_projects": 1, "has_downloads": 1, "has_wiki": 1, "has_pages": 0, "forks_count": 0, "archived": 0, "disabled": 0, "open_issues_count": 2, "license": {"value": "bsd-3-clause", "label": "BSD 3-Clause \"New\" or \"Revised\" License"}, "topics": "[\"ai\", \"biocuration\", \"curation\", \"gpt\", \"llm\", \"monarchinitiative\", \"obofoundry\", \"ontogpt\", \"ontologies\", \"ontology-tools\"]", "forks": 0, "open_issues": 2, "watchers": 8, "default_branch": "main", "permissions": "{\"admin\": false, \"maintain\": false, \"push\": false, \"triage\": false, \"pull\": true}", "organization": {"value": 5161984, "label": "monarch-initiative"}, "temp_clone_token": "", "allow_squash_merge": null, "allow_merge_commit": null, "allow_rebase_merge": null, "delete_branch_on_merge": null, "network_count": 0, "subscribers_count": 1, "parent": null, "source": null, "allow_auto_merge": null, "allow_forking": 1, "visibility": "public", "is_template": 0, "template_repository": null, "allow_update_branch": null, "use_squash_pr_title_as_default": null, "web_commit_signoff_required": 0, "squash_merge_commit_message": null, "squash_merge_commit_title": null, "merge_commit_message": null, "merge_commit_title": null, "has_discussions": 0, "security_and_analysis": null}